barSeed - Barley Seed Development Database

Probe CUST_5289_PI390587928

Source Contig U35_3794

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5289_PI390587928	Hv_44K_v2	CGTGCGCTTTCCATGACTTCAAGCTTAAAGATTTCAGAAGATTGTTTTCTTCCTAAAAAA	703	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.405	1.812	1.308	0.906	0.306	0.410
Raw	400.256	824.875	500.644	537.663	64.809	94.124

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21808.2	1248	9e-22	1183 - 1237	100	55 / 55	plus	ABC09481
JLOC1	JLOC1_15119.1	580	5e-22	432 - 486	100	55 / 55	plus
Harvest21	ABC09481	771	3e-25	704 - 763	100	60 / 60	plus	ABC09481
Harvest35	U35_3794	774	3e-25	704 - 763	100	60 / 60	plus

Contig Sequence (774 bp)

>U35_3794 774 Hv_44K_v2
CCCGTCCCGTCTTCTCAGGCTTCTCGTTGCCCCCCCCCCCCCCCCGGCGCGCCGTCGTCT
CTGCCCATCTCACTAGATCCCCATGGCGGACGAACCCAACCGAGCGGCTTTCGTAGAGCT
GCAAAGTCGGATGATCGAGACCACCGGCAAGATCAAACAGTTACAATCTCAGATGTGTTC
TAAAGAGAGTGAAAAGAAGCGTGCGTACCTTACACTGGAGGAACTTAGCCAATTGCCTGA
TGATACAAACACTTACAAGGCCATTGGTAAAGTGTTTATTTTGGAGCCAAGATCACTTCT
GGTAAATGAGCAAGAGAAAAAGCTAAATGACAGTGAGACTGCAATATCGTCAATGCAGAC
TTCCAAGGAATATCTTGAGAAACAGTTGGGAGAAGTGGAGAACAACATTAGAGAGCTACT
TCAGCAGGACCCTGGGCTTGCACGCCAGATTCTCTCAATGACTGTCCAGTGAGAGGTGGT
TTTTGAATGTATTTCTAGATGGGATGTGTCAACAAGATTTGTGTTTTGCCCCGAGGAAGA
AGCCCCTTTGTTATGAGCTTAACTGCTACTGGATTTGTTATGAGCTTTAACTGCTACTGG
TTTTGTGATGAGCTTACCTTCCAGCACCATATTGTGAAAAATATGACGTGAACAATCCAT
GCCTGAATGTCGTATGATGTTGAATCATCATTTATATATATTACGTGCGCTTTCCATGAC
TTCAAGCTTAAAGATTTCAGAAGATTGTTTTCTTCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g26440.1	129	1e-69	protein\|prefoldin subunit, putative, expressed
Brachypodium v1_2	Bradi3g43090.1	130	8e-72
Arabidopsis v10	AT2G07340.1	128	3e-56	\| Symbols: PFD1 \| PREFOLDIN 1 \| chr2:3045644-3046606 FORWARD LENGTH=128