barSeed - Barley Seed Development Database

Probe CUST_5287_PI390587928

Source Contig U35_3796

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5287_PI390587928	Hv_44K_v2	AGCAACATAACTCTTGGCAGAATTGACTTGCTCTAATTGGACTGTGATGTCGGAAATGCA	1428	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.543	1.551	1.121	0.868	0.511	0.533
Raw	1265.983	1965.844	1258.433	1504.808	315.293	358.822

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_3796	1530	3e-25	1429 - 1488	100	60 / 60	plus

Contig Sequence (1530 bp)

>U35_3796 1530 Hv_44K_v2
GAAGAGGAGGTAGAGGAGGAAGAGGAGGAGGAGAGGCCCACCGCCGATGGGGCGCGAGAT
GGAGGAGGTGGAGGGGAGGTCGTTGGTAGCGGAGAGGCCGGTGGCGTGCAAGGCGGCAGG
GACGTGCCTGCCGAGCCCGCCGACGGGTCCGGGAAAATTTTCGTTGGGGGTGTAGCCTGG
GAGACAACCGAAGAAAAATTCACCAAGCATTTTCAGAAATATGGAGCTATAACTGATTCT
GTGATCATGAAAGACAAGCATACTGGGATGCCTCGTGGATTTGGATTTGTTACATTTTCT
GATCCATCTGTGATTGACAGGGTTCTGGAGGATGAACATACTATAGATGGAAGAACGGTT
GAAGTCAAAAGAACTGTGCCTAGAGAGGAAATGTCAACAAAAGATGCTCCTAACAAGACA
AGAAAGATCTTTGTTGGTGGCATTCCAGCATCTCTAACTGAAGATAAGTTAAAGGAGCAC
TTCTCCTCATATGGGAAAGTGGCTGAGCATCAAATCATGGTTGACCATAGCACTGGCCGT
TCACGAGGCTTTGGTTTTGTTACCTTCGAAAGTGAGGACGCTGTTGAAAGGGTTATGTCA
GATGGGAGAATGCATGATCTTGGAGGGAAGCAGGTTGAAATAAAAAGGGCCGAGCCAAGG
AAACCTGGTGGTGGTGATTCAAGCTCTAACAGTAGACATAGCCATGGAGGAGGTGGCCAC
CGTAGTTCATACCGTGGTGGAGGCGGCGGCAGTGGTGGAGGCCGTTCCATGATCAGCAGC
AGCAGTGGCTATGGGCATGGAGCTGACTACCGATCAGCTGCAGCAGCCTACTATGGTAGT
GCAGGATATGGTGCCTACGGTAGAGGGTATGGTGCATATGGAGGTAACCCTGCCTATGGG
TCAGGTTTTGGCTCTGCTTATGGTGGTTCTATATATGGAGGCCCGTATGGTGCATATGGG
GCATATGGGGGTGCCTATGGAGGTGGCGCATATGGTACACCTGGTGGCTATGGTGCAGGT
GCAGGTGCAGGCGGGTATGGTGGCTATGGGGGAACTGGAAGCATGGGTGGTGGTGGGAGC
GTGAGTGGTCGAGGCTCCGGCAGGTACCACCCATATGGGAAATGAGTCCACAGCTGGTTC
CTAGTATCTGATAATAAACACATACACCCGCTCATTTCTGCTATGAGAAGTTGCAACACT
CCATTGACCTTGTCTGATGAGAACATTTTGCATTCTTGCATTGCACTCATTTTATCGGAC
GTGAATCTAGATTCTAGTTGCTGAAAACTGAACCAGCACGAGCTTTATGTCGAAGCTTCA
GCTAAAACACTGTTGTATTCATTGTAGAACCCTCGAAAAAGTTGGACCCAACTTCGTGAA
CAATATCTATCTATTGGCACGATGTATTACTATGTAACAGTCTAACCAAGCAACATAACT
CTTGGCAGAATTGACTTGCTCTAATTGGACTGTGATGTCGGAAATGCAGCGGCCGCTCGA
GCATTTTCGAAAGGGCCCAATTCGCCCTAT

Homology of Contig U35_3796 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g12850.1	398	2e-100	protein\|RNA recognition motif containing protein, expressed
Brachypodium v1_2	Bradi1g37692.1	411	1e-112
Arabidopsis v10	AT5G40490.1	423	2e-69	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr5:16225483-16227423 FORWARD LENGTH=423