barSeed - Barley Seed Development Database

Probe CUST_5283_PI390587928

Source Contig U35_20800

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5283_PI390587928	Hv_44K_v2	ATACGGATTACAGTGATAAAATGAGTATCAAAGAGTTGTAGGAGCCACACATGGCGTCCC	914	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.577	1.503	1.236	0.941	0.594	0.568
Raw	77.465	119.062	82.944	97.357	21.947	22.847

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42722.1	1018	4e-23	928 - 987	98	59 / 60	plus
Harvest21	ABC13810	1018	3e-25	915 - 974	100	60 / 60	plus	ABC13810
Harvest35	U35_20800	1018	3e-25	915 - 974	100	60 / 60	plus

Contig Sequence (1018 bp)

>U35_20800 1018 Hv_44K_v2
ATTGATCCGCATCTCTCTCAAGCCCGGTGCGATGTTCCTGCGGCGCCTGAGCACGTCCGC
CTCCGGCGCCCTCCGCCGGCGCCGCCGCGGCGCCAAGGACGACGGTGTCGTAACCGCCCT
GCGTGCGGAGATCGCCCACGAGCTGTCCTCTTCCCCCTCCTCCTCCTCCCCCCCTTCCCT
CCATTATCAGGAGACTCTTGGCTTTGCCACCGTGTCGGATGCGCCGCGTGCGCAGGACGT
GCTTGTGCGCCGCCGCGGAGACGCCGAGGAGGTCCACGTGTCGGCGCTGCTCGCCCCACT
GCGTTTCGAAGGCGAGGAACCGCTGCCCAGGGACGCGCTCATGAAGGTGTTCGTCAGCAA
ACCAGGAGTGGAACCGCTGCTGCGCTTCGACTGCCGCGCGGTTGCCGCCGCCGGCGGCGC
TGCTGCTGGCTATGATATAACTGCCCTTTCGTATCACGCGTTCCCTGGCGATGGTGGAGG
CCGCAAGTATGAAGGGCCAGACTTCGGGCTTTTGGATCCTAAGCTACAGACTGCACTGAA
AGAATATCTCCTGGCAAGAGGTGTTACCCCCGAACTGGCGACCTCACTTCGTGAACACTT
GCTTCAGAAGGAGCAGGCCCAGTACGTGAGCTGGCTGAAAACATTGGAAGGGATGTTCAC
CAAGGATCATTGACCTGATTGTTGGCCGAAAAGATGAAGAAGAGAACGATTGTTGACCTA
TTAGACTATTAGTCCTCGGCTGTTCAACTTTGCTCGTCAGTTGTTAGTCTGTTCCTGACG
AGACGAATGCTTAATGTTCTTTTGGCCGTGACAATGCGGGATATAAGGTGAATGCTGTAT
CTCGGTTAAGTCTGTGTCCTGTGAAGTTACAGTAAATTTTTTTAGGGGTAAATGCTTTGC
TTTATTGATGAATAATACGGATTACAGTGATAAAATGAGTATCAAAGAGTTGTAGGAGCC
ACACATGGCGTCCCTCCCCCAAATGCAAAGCATGCTTAGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20800 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04440.1	211	6e-67	protein\|expressed protein
Brachypodium v1_2	Bradi4g43310.1	221	2e-77
Arabidopsis v10	None