barSeed - Barley Seed Development Database

Probe CUST_5281_PI390587928

Source Contig U35_20802

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5281_PI390587928	Hv_44K_v2	ATGAAAGCTTGGAAGCAATGTCATCAGCCTTACCTCTCTTGTCCTTCTTCACACCATCAG	991	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29380.1	389	2e-24	295 - 354	100	60 / 60	minus	ABC17168 ABC45971
MLOC	MLOC_56600.1	212	7e-23	134 - 193	98	59 / 60	plus	ABC45971
MLOC	MLOC_25093.1	437	3e-21	225 - 284	97	58 / 60	plus	ABC45971
JLOC1	JLOC1_19569.1	390	8e-25	295 - 354	100	60 / 60	minus
JLOC1	JLOC1_17188.1	270	2e-21	72 - 131	97	58 / 60	plus
Harvest21	ABC45971	506	3e-25	379 - 438	100	60 / 60	plus	ABC45971
Harvest35	U35_20802	1119	3e-25	992 - 1051	100	60 / 60	plus

Contig Sequence (1119 bp)

>U35_20802 1119 Hv_44K_v2
GAATTAAAAGAATGGGTGATCTTGATTTGAAATCGTTTGCGATTGCTTGCAAAAATAAAA
TGTCGAAAGAAGATGCAGGCGTTACTGCTTCCATTCTTTGTTCAAAGTGGGAGGAAGAGA
TTAAAGATCCAGAATGGCATCCTTTTAAAGTTATCGTGGATGAAGGCAAAGAGAAGGAAA
TTCTTTGCGAGGATGACGAGAAGCTGCGAGAACTGAAAGAAGAGTATGGCGAAGAAGTGT
ATGGCTTGGTAAAAAAAGCTTTGCTTGAAGTTAACGAGTATAACCCTAGTGGCCGCTATC
CTGTACCTGAGTTGTGGAACTTCAAAGAGAAGAGGAGAGCAACTCTGAAAGAGGCTGTCC
AGTACGTCCTGAGGCAGTGGCGCACACAGAAGAGGAAGCGCTGAGCCCAGATATCTGGAT
TACTGAAGAATTGAACTAGAAGTGTGCTTCTGTTATTTTCTCATGAATGTTGGTAAACGT
TTAGTTGTTGGGGTTTCGCTGGATATATTCAGCGTGGTGTAGCATTGACATGAATGCTGG
TACTTGGAGATTGTGAACCGCCCTTTTAGGAATATCTATTTTGTGCCAAGCTATGTGCTA
GTATGAATGAACGGCTACTAGTTTGTTGAGCGGCCGCTCAACAACTAGCAGAAAGCATCA
AATTATTCTTACAACAACTAGCAGAAAACGGTAAATTGTTCTTACAACAACAACATATAA
CTCACATTACTCTAGGCCGCGAGCAAGGATCTCCTTCTGCTTAGCTTGGTAAAACTGCTT
TTGCACATCAGTCATACCACTAGTGTCGATGAGCATGATCCTCTCATCTAATTCAAAATG
TCTTCGTGCATCCTCCCTATCGTTTCGTGCACCCTCCTTCTTTTTAGTGCAATCTCCTCT
TTTCGCAATTCAAGTTGTTGCGCGTAACGAGCATTTCTTGCCGCCTCTTTGACCTCATCC
TTCTCTTGCTTTGCTGCCCACACAGTTTCTAATGAAAGCTTGGAAGCAATGTCATCAGCC
TTACCTCTCTTGTCCTTCTTCACACCATCAGGTCTTTTCTCATGTTTAAGAGCATCGGTG
CGTATCGAGGTAGCATCAGTACGTACCAAGGATGCATCA

Homology of Contig U35_20802 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g43557.1	518	7e-61
Arabidopsis v10	None