barSeed - Barley Seed Development Database

Probe CUST_527_PI415269222

Source Contig TA41557_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_527_PI415269222	Hv_44K_v2	TTTAATAGAAATGTTCTCTTGAGTAGTACCCTAGCACTGCTGTCTACAAATATACTGGAT	559	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.161	1.719	1.514	0.902	0.211	0.162
Raw	853.733	1930.010	1492.713	1433.172	113.713	97.773

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75464.3	2445	2e-24	2270 - 2329	100	60 / 60	plus	ABC12144 ABC12145
JLOC1	JLOC1_50343.1	1877	8e-25	1723 - 1782	100	60 / 60	plus
Harvest21	ABC12144	534	3e-25	445 - 504	100	60 / 60	plus	ABC12144

Contig Sequence (682 bp)

>TA41557_4513 682 Hv_44K_v2
AAGCCCGGGCCGGCGTCCGAGCGCAACTACGGCCTGTTCAAGCCCGACAGCACGCCGGTG
TACCCGCTGACGTACAAGCCTGCGGGCGGCGGAATCGGCGGGGGCAACAGCACCGGCGGA
GACAACGACTACTACGACATCTCGGCTGCGTCGCGGGAGCCCACGGGTCGGCGGTGGACA
TGGGCGCAAGCTGCTGTGTCAGGAGGTGTTGCTGCCCTCATTCATGGTTGCAGCCTGAGG
TACTGAGATCATCATGGAGCGTGCCACTCTCTCTCGTCTTGATGGCTGAGATTCAGGGGT
AGGTAGATAGGACGGAATGGAACTGCCTGCTCTGGAGCAATGGTGTTGATGATGATCGTG
ATCCGCTGCGCGGCGCTCCTTTGCTGTTGTGGTTGCTCAAGACCGAGACCGAGACGTGGA
TGTCTGATGAAACGATTAATTTGATGATGGCATCCGAGCTATGTACTACACACTCTCTAG
TTCCGATTCATCTTGGTGCCTTAAAAACCGCTGATCGTTGGGACTAAAATAGACCCAGAT
CAGTCGGTTTTAATTGCCTTTTAATAGAAATGTTCTCTTGAGTAGTACCCTAGCACTGCT
GTCTACAAATATACTGGATTTCATGAGGTGCCAAAGCTGAAGACTAGTAGCCCTTCCAAA
TAAAATGAAAATAAATGAAGCT

Homology of Contig TA41557_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None