barSeed - Barley Seed Development Database

Probe CUST_5279_PI390587928

Source Contig U35_20804

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5279_PI390587928	Hv_44K_v2	TTACTTATGCTGAGATGATTCTTGGGACCAATGATCTGTGGGACGAGAATGATCCATGGG	844	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368758	3597	2e-24	1028 - 1087	100	60 / 60	plus	None
MLOC	MLOC_71383.3	1180	2e-24	1023 - 1082	100	60 / 60	plus	None
MLOC	MLOC_71383.5	1080	2e-24	969 - 1028	100	60 / 60	plus	None
MLOC	MLOC_71383.1	1299	2e-24	1143 - 1202	100	60 / 60	plus	None
JLOC1	JLOC1_47442.1	1198	8e-25	1039 - 1098	100	60 / 60	plus
Harvest21	ABC13486	912	3e-25	845 - 904	100	60 / 60	plus
Harvest35	U35_20804	912	3e-25	845 - 904	100	60 / 60	plus

Contig Sequence (912 bp)

>U35_20804 912 Hv_44K_v2
GCTACCGCCTCGTCTCCGCCGTCAACGCACTCGAGCCGCCTCTTCGGAGGCTTTCCGACG
AACAGCTGAAGGGGAAGACGGAGGAGTTCCGCGCGCGCCTGAGCCGCGGGGAGACGCTCG
CCAACCTCCAGGCTGAGGCGTTCGCCGTGGTGAGGGAGGCGGCAAGGAGGACGCTCGGCA
TGCGGCACTTGGATGTTCAGATTGTTGGTGGCGCCGTGCTCCACGATGGGTGCATTGCCG
AGATGAAGACTGGCGAGGGGAAGACACTCGTGTCCACCTTGGCAGCTTATCTCAATGCAC
TGACTGGGGATGGAGTTCATGTGGTGACTGTAAATGATTATTTGGCACAGCGAGATGCTG
AATGGATGGGCCGCGTTCATTGTTTTCTTGGTCTAACTGTCGGTCTAATTCAGGCGGGCA
TGAAGTCTGATGAGAGGAGAGCCAACTATATGTGTGACATTACATACACTAATAACTCGG
AGCTTGGATTTGATTATCTTCGTGACAACTTATCACGTAAGAAAGAACAGCTAGTCATGA
GATGGCCAAGACCATTCCATTTTTCTATCGTGGATGAAGTGGATTCAGTGCTTATAGATG
AAGGAAGAAACCCATTGTTAATAAGTGGAGAGGTTTTCCTTGCTAATTCTTTTGATAACC
TTGTTCCTCGTATGCCTGGTCTGTCGAAATGCAAGATGTTCATCAGCATTTTCTATCCTA
TATTAGGATAATAGAGAAGCAGCACGGTATCCAGTTGCTGCTAAAGTTGCAGATCTTCTC
ATGGAGGGTGCTCATTATACTGTAGAACTGAAGGGCAATAATATAGATCTAACAGAGGAT
GGAGTTACTTATGCTGAGATGATTCTTGGGACCAATGATCTGTGGGACGAGAATGATCCA
TGGGCAAGTGCT

Homology of Contig U35_20804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g08980.1	1097	4e-116	protein\|preprotein translocase secA family protein, putative, expressed
Brachypodium v1_2	Bradi4g23380.1	1061	2e-134
Arabidopsis v10	AT1G21650.3	1805	2e-110	\| Symbols: SECA2 \| Preprotein translocase SecA family protein \| chr1:7592891-7604152 REVERSE LENGTH=1805