barSeed - Barley Seed Development Database

Probe CUST_5271_PI390587928

Source Contig U35_20812

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5271_PI390587928	Hv_44K_v2	GAACAGACTTGGATACTTTGCTTATGCCTATTTTGGAAATGCTCTACAATGCATCAAGGA	1244	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.106	0.266	1.075	2.153	1.182	1.178
Raw	7.406	31.510	107.187	352.210	65.557	71.337

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20381.1	1844	2e-24	596 - 655	100	60 / 60	minus	None
MLOC	MLOC_20381.2	1855	2e-24	596 - 655	100	60 / 60	minus	None
JLOC1	JLOC1_14118.1	1850	8e-25	1195 - 1254	100	60 / 60	plus
Harvest21	ABC13858	1304	3e-25	1245 - 1304	100	60 / 60	plus
Harvest35	U35_20812	1304	3e-25	1245 - 1304	100	60 / 60	plus

Contig Sequence (1304 bp)

>U35_20812 1304 Hv_44K_v2
CCCGCGTCAAACCCTAGGCCCCCCCCGCCGAGTCCTCCCAGATCCAATGGGGGCGGCGCC
GTCGACGCCGAGGCTGGGCGAGGCGGGCGCCGCGTCGCCGGGGGCCGCGGAGCAGATGTT
CGCCGCGCTCGTCGGCGACAGGGCCTACCCGATCTCCTCCGAGTTCTGGAGGCAGCTGCT
CGAGCTGCCCCTCACCCAGCAGTGGCCGCGGGACCGCGTGCTGCAGGCCTGCCACGCCTT
CGCGCAGAACAACTACCATACAAAGCATCTTGCAAAGATCTTGATCCATTTGGTTTGGTG
TTTGCAAGAGTGCACATCAGCTTCTTCTGTATCTTCTAGTGTCTATAGAAAGGCTATCAA
TGCTGCCTACATATCATCCATATTTCTCAAGTTCATTATTGAGAATGCCAAGGCAGATAA
TTGGCAAGAGCTATGCCTTGACATCGACAAGGATGAAAAGGGGCTGGAAAATTTTCCTTC
TGACCAAAGTGTGGAGTATTTTCTGATGAAGGGGGTGCTGAACTACATTGGTAGTGTAGA
TGTAAGTCCGGAGTCATGCTACCTACATCACGAGCTTCTGAACTTGATGCTAGTCCTTAT
GTCGACTCAGTTATGTTCTGGACCATCTCCAGAACCAAAAGATGTGCATCCTTTCATTGA
TGCGGCTATGCTTCAGGACAGTTCCATAGTAGCTTCGGTTGTTCAAAAGTTGCTACTTAA
TTTTGTAAGACGGCCACAAATTCCTTCAAATGATTCACACCCTGTTTTCTCTGATGATGG
TGGGCCTGGTGTTCTGCAACGAGTTGGCTCAGCAGCTGCAAATTTTGTACTACTGCCATA
TTATACTTTCAACTATTTTGTAAGTGCAAGTGCTGAAGGTGCGACAAGTCAATTGGCAGA
TAACAGTTTACTTGTTCTGCTTATTCTGATCCACTACCGAAAATGCATCTCAATGAACGA
GTCCATTCCAACCGACGGTGTCTACATGAGTGATTCAACTACCAATGTCAAGGATGCACC
AGCTTTTCATGAGAACCCTTACTGCAAGGCGATAAACAATGCTAAGGACATTCAATTTGA
TCATGCCGATGTTGAGGGAAATGCTCAAAATGGACCCGTTGTCAGGCTGTCTTTTGCATC
GCTGTTTGATGCTCTTGGCACATGCTTAAAAGATGAGAGCTCAGTTCTGTTGCTCTATTC
TCTGGTCCATGGGAACTGCGATTTTCAGGAGTATGTTCTGGTTCGAACAGACTTGGATAC
TTTGCTTATGCCTATTTTGGAAATGCTCTACAATGCATCAAGGA

Homology of Contig U35_20812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56630.1	715	0.0	protein\|dymeclin, putative, expressed
Brachypodium v1_2	Bradi2g51430.2	674	0.0
Arabidopsis v10	AT1G04200.1	732	3e-124	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). \| chr1:1109676-1113875 FORWARD LENGTH=732