barSeed - Barley Seed Development Database

Probe CUST_526_PI390587928

Source Contig U35_6907

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_526_PI390587928	Hv_44K_v2	GATATCAAAGTTTATGTCATCGGTCTATCACAAGTACCAACAGTTGATTATTTTTGGCAG	1133	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12190.2	4688	2e-24	792 - 851	100	60 / 60	minus	ABC04155 ABC43329 ABC49719
MLOC	AK371357	4388	2e-23	4331 - 4388	100	58 / 58	plus	None
JLOC1	JLOC1_8169.1	3898	8e-25	3739 - 3798	100	60 / 60	plus
Harvest35	U35_6907	1277	3e-25	1134 - 1193	100	60 / 60	plus

Contig Sequence (1277 bp)

>U35_6907 1277 Hv_44K_v2
CACGCGTCCGAAAAGACATCAAATTCTTGAGGCATGGGGTGACCATCTTTTTGAAGAGAA
ATGCTTTGGAGAAGCTGCAATAACTTATCAATGCTGCTCATCATATCAGAAATCTTTGAA
AGCTTATCATGTCTGTGGGGACTGGAGAGGTGTGTTCACTGTTACAGGCCTTTTGAACTT
CACAAAGGAAGAAATTCTTCAGCTAGCACAGGAGCTATGTGATGAGTTCCAAGCACTCGG
GAAGCCAGGAGATGCTGCCACAATCGCACTGGAGTATTGTTCAGATGTTGATAGAGGTGT
AGGCTGCTACATCATGGCAAGAGAATGGGAAGAGGCCCTTAGAGTGGCTTATATGCACAG
CAGGCAGGATCTTGTTGATACTGTTAAAGATGCAGCTCTGGAGTGCGCTGCATTGCTGAT
ATCTGAGTATCAGGAAGGATTGCTGAAGGTGGGTAAATATCTAGCACGCTACGTCGCTGT
GCGGCAGAGGAGATTATCTCTCGCAGCTAAACTACAGTCAGAGGACCGATTTATGGATGT
CGAAGACGACAACATTTCAGAAGTGAGCTCTAGCTTCAGCGAAATGAGTGCATACACCAC
GAGATCAACAAAGGAATCGAGTGCGTCTGTCATATCTAGCAGCGCCAGCAAGTCACGTGG
GTCAAGACGTCAAAAGAAAGGTGGCAAGATACGAGCTGGAAGTCCTGGGGAAGAGATGGC
ACTTGTGGAGCATCTCAAGGGGATGTCTCTGGCCACTGGAGCGCAAAAGGAGCTTAAAAG
CCTGCTTGTAGTTCTAACACAGCTGGGGAAAGAAGATGTCGCCCGTCAGGTGCAGCTCGC
TGGGGACAATTTTGAAATATCGCAGGTGGCTGCAGTGAAGTTGGCCGAGGATACAATGTC
TACCGACAAGATGGACGAGAATGCGCATACCCTTGAGCATTACACGAAGATGCTGAGAGC
GCATCAGCCTGCGGCAGGCGAAACCTCCTCCTGGCGAATCAAAGCTCTGTCGCCGCCTTG
ACTGGTTTGCCAACGTGTTGCTGTTGGGACACTGGAGGTTGGCCAGGCAGCGCTGATGTT
TGCTGTACGTCCCAACATGTTTCAGCAATTTTGTAGTTGTATCATTTATCGTGGATATCA
AAGTTTATGTCATCGGTCTATCACAAGTACCAACAGTTGATTATTTTTGGCAGAAATAAT
ATTGCTGAAATGTACATTTCAATACTTAGTACATCACAAGTACCGATAGTTGATCATTTT
CAAAAAAAAAAAAAAAG

Homology of Contig U35_6907 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37640.1	1344	1e-165	protein\|IKI3 family protein, expressed
Brachypodium v1_2	Bradi1g24690.1	1330	2e-172
Arabidopsis v10	AT5G13680.1	1319	3e-90	\| Symbols: ELO2, ABO1 \| IKI3 family protein \| chr5:4410522-4415471 REVERSE LENGTH=1319