barSeed - Barley Seed Development Database

Probe CUST_5265_PI390587928

Source Contig U35_20818

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5265_PI390587928	Hv_44K_v2	CTGTTGTGTCGTGGCTTGTTTGAATTCCCTCTTTGTTTCACTTTTTCACTTTGTTGCTGG	1342	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.091	1.050	1.198	0.987	0.444	0.572
Raw	984.756	1435.124	1464.260	1906.755	300.342	420.634

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363964	3082	2e-24	2985 - 3044	100	60 / 60	plus	ABC06045 ABC13768 ABC31161 ABC41631 ABC42806
Harvest21	ABC13619	1406	3e-25	1343 - 1402	100	60 / 60	plus
Harvest35	U35_20818	1406	3e-25	1343 - 1402	100	60 / 60	plus

Contig Sequence (1406 bp)

>U35_20818 1406 Hv_44K_v2
GGATACCGCCACCTTCGGTGCCCATGCCCCTCGTGCCCCTCCTCTCCCTCCGCCTCCGCT
GTGGCCGGCTAACGCGCAGTCCTCGTCCTCCTCTGCCTCCTCATCCTCCACGACCGTACG
CACCAAGGCCGAGGCGCGAGCCCAGCGCGAGCCACTTCTGCTTGCCCTCGTCCCGCGGCA
TGGGAGAGGATGAGGACGAGCCCTCGTCACGCGGGGAGCTGCGTCACGCGTGCACGGGGA
TGGGCGTGGCGCTGACCAGGCATGTGAGCCAGCTCAAGATTCGAAGGATGGCAGTTCTTG
TGGTGAGGCAGGGGCGCGAGCAGTAGCGGTGCAGCGCGAGCACCGGCAGGCGCATCGTGG
TGGGGTGCATTCCGTACCGGGTATGCGAGGGCGAGGGCGAGGGCGAGCTGGAGGTGCTGG
TCATCAGCTTGTGAAAGGGGCACGGCATGATGTTCCTCAAGTGCCAGCAAGGCCCTCGAC
GTCCTCATCGACATCTGCGGAAGTCAACTCCTCCCCCTTCGTTTTTTCTGATGGTTCAGG
CGCGCAAGGTCGTCATGTCCGAGGACGACACCGCGAGGGGGCTGGTCTAGCTCTTCGATG
ACCATGCCGTCACCGAGATCGTCATTGGCGCCATTGCTGACCGGGGATACACCAGGAAGT
CGCGGACGCCGAAGTCCAAGAAGGCGGTGAGGGTGCAGCGGAAGGCCAACCCCTCTTCCA
GGATCTGGTTCGTCTACAAAGGAAACCTCATCTGCACTAGCGCAGGCTCGCGGTGAAGAA
CCTCAAGGCCGAGTAGGACCCCGGCAAGCCCAAGCGCACCTCAAGCACCTTCTTAGTCTT
CATGGCAGCCCTGGTTTCGATTCGTTGGCGTGGTTCGGTTTGTGTTGCCTCTGTGGCATC
GTAACGTGTCCTGACTAGGGGCAGGGCATTTTGGTTTTCTTTTCACAGGGATAGCTTCAG
CAAGGACTCCAACATCAAGCAGGTTTCTCTGGTTGGCAAGGCCAGTGGTGAGAAGTGGAA
GTCTCTTAGTGATGTTAAGAAGGCTTCCTACTTTACCAAGGCTGAGCAGCTCAAGGTCGG
GTACACGACGCCTACACGGATTAGAAGAGTAGAAGCGGGGGAGGGGGTTTGAAGTCTTTG
GAACTTCACCATTGCTACGAATTGCTAGTGTAATTGATTGATGATTGATGGTTCTGTTGT
TGGTAGAAATGGTTAAATCCTATTAGGCGGTTGTTGTTGCTGGTAGAAATGGTAGCTCTA
GTCCCATGTAGTGTAGTTCACGTGCTTGGGTTGCCCTATGTTGCTTCATGTTTATGTTAA
TTAAGTATGTCAAATGTACCTACTGTTGTGTCGTGGCTTGTTTGAATTCCCTCTTTGTTT
CACTTTTTCACTTTGTTGCTGGAATA

Homology of Contig U35_20818 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None