barSeed - Barley Seed Development Database

Probe CUST_5261_PI390587928

Source Contig U35_18502

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5261_PI390587928	Hv_44K_v2	TTGTGACACTGTCTATTCATGTCGCTGCTCCGAAGGTTTTGACATTGGACCAGGAAAAAA	1386	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.137	1.910	1.035	0.762	0.407	0.479
Raw	3007.017	4218.150	2003.557	2349.011	434.924	559.779

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_18502	1457	3e-25	1387 - 1446	100	60 / 60	plus

Contig Sequence (1457 bp)

>U35_18502 1457 Hv_44K_v2
GAGAAGGACGCCGGCCAGGGCGAGATCAAGAAGGCGTATTACGCGCTTGCGAAGAAGCTC
CATCCAGATACAAATAAAGGTGATGCCGATGCAGAAAGAAAGTTTCAAGAGGTTCAGAAA
GCTTATGAGACTTTGAAGGATGAAGAAAAAAGAACGGTCTATGATCAGGTTGGCCCTGAT
CAATATGAGAGGGCTGCTGCTGGCGGTGGTGGACCTGGCGGATTCGAAGGCGGTTTTGGA
AATCCTTTTGAAGATATTTTCAGTGGCGGTGCTGGCCGTACTGGCGGAATGAATGATTTT
CTTCGGAACATCTTCAAAGATAGAGAATCTGGTGGACAGGACGTTAAGGTTAAGCTTGAG
TTATCATTTATGGAAGCAGTTGAAGGATGCAAAAAGACAATCAACTTCCAGACTTTAGTA
ACATGCGAAACCTGCAATGGAGCTGGTGTACCTGCGGGAACCAAACCCGAAACTTGTCTA
GCTTGCAGGGGTTCTGGATATATGATTCTGCAAACTGGTCCCTTCAGAATGCAATCAACA
TGCTCGCAGTGTGGTGGATCTGGCAAGACTGTAAAGGATTTCTGCAAGTCATGCAGGGGG
AAGAAGGTTGTGCCAGGAATAAAAACAGTCTCTATTGATATAGCGCCTGGTACGGATGAT
GAGGATGTCATGAAAGTGCTTAGATCAGGTCAAGCAGATCCAGACGGTCTTCGTCCTGGT
GACCTTTATGTAGCCATTAAGGTTCGTGAGGATCCAGTATTCCGAAGAGAGAAAGGTGAT
ATCCATGTAGATGCTGTCTTAAATGTGACTCAGGCAATTCTGGGAGGTACTGTTCAAGTA
CCAACTCTCGCGGGAGATGTTGTTCTAAAGGTTAAGCCTGGTACTCAACCTGGTCAGAAG
GTTGTTCTGAGAGGAAAAGGAATCAAGACAAGAAACTCATATTCATATGGAGACCAATAC
GTCCATTTCAATGTCAAAATTCCTGTGAATTTGACACAGAAACAGCGCATGCTTCTCGAG
GAATTCGAGAAGGAAGAGAAGGGCGAGGACGACAAGGACGCGGAAAAGGCAGCTGGCGCA
TCGGGATAGCCGGTCTTAGGAGCCAAGCTGCCCAGCATTTCATGGGCGGGTTTAGCTCAT
CACACACCACAAGATAGAGTAGGATGCTGCCTGGAATTCACAGGTTTAAGTTACATAGTT
AGGTTGCATGGAATTCGCATGGCAACACATAGATCCTGGTTTCGAGTTTTTGTAGCTGTG
GAATAATGCTACACGCTGCCGCCCCGCATGTACTCTTCTCCCAAGAGTGAGGCATGACGG
TTGGGGGCATCTTGTATTGTATAATTGATCTTGATCTTGTCATGTTTTAGAGACACACTG
AACTCATTGTGACACTGTCTATTCATGTCGCTGCTCCGAAGGTTTTGACATTGGACCAGG
AAAAAAAAAAAAAAAAA

Homology of Contig U35_18502 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02620.1	443	3e-178	protein\|chaperone protein dnaJ, putative, expressed
Brachypodium v1_2	Bradi1g01507.1	446	0.0
Arabidopsis v10	AT5G48030.1	456	1e-126	\| Symbols: GFA2 \| gametophytic factor 2 \| chr5:19466298-19469753 REVERSE LENGTH=456