barSeed - Barley Seed Development Database

Probe CUST_525_PI390587928

Source Contig U35_44056

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_525_PI390587928	Hv_44K_v2	TGAGATCTTAAAGATTATCCAGTGCGGTGTTCAATTTGCCTTCGTGGACCTCCCAAAGCA	111	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375660	3879	2e-24	3007 - 3066	100	60 / 60	plus	ABC00736
MLOC	AK369248	3769	2e-24	2889 - 2948	100	60 / 60	plus	ABC00736
MLOC	MLOC_5703.2	1082	2e-24	258 - 317	100	60 / 60	plus	ABC00736
MLOC	MLOC_5703.1	2886	2e-24	2093 - 2152	100	60 / 60	plus	ABC00736
JLOC1	JLOC1_3679.4	1247	8e-25	239 - 298	100	60 / 60	plus
JLOC1	JLOC1_3679.3	1264	8e-25	253 - 312	100	60 / 60	plus
JLOC1	JLOC1_3679.2	2688	8e-25	1680 - 1739	100	60 / 60	plus
JLOC1	JLOC1_3679.1	2816	8e-25	1805 - 1864	100	60 / 60	plus
Harvest21	ABC00921	715	3e-25	158 - 217	100	60 / 60	plus
Harvest35	U35_44056	172	3e-25	112 - 171	100	60 / 60	plus

Contig Sequence (172 bp)

>U35_44056 172 Hv_44K_v2
GGCACCAGCAAAAAACCACCACCTGATAGCCAAATCTTACTCGGAGTGTCAAGATCTTGC
TAATCGGCTTGCCGGCTACTATGTTGGCACAGTTCGTATTAAAAACAAGTCTGAGATCTT
AAAGATTATCCAGTGCGGTGTTCAATTTGCCTTCGTGGACCTCCCAAAGCAG

Homology of Contig U35_44056 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None