barSeed - Barley Seed Development Database

Probe CUST_5255_PI390587928

Source Contig U35_18508

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5255_PI390587928	Hv_44K_v2	TGGCTGAGAACAGTATGTAACTCACAACCTATCTACAAAGCCAGAGCGCATACGAGTTCA	1884	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.934	1.928	1.066	0.806	0.276	0.324
Raw	1054.034	1644.578	793.960	952.400	110.392	143.177

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36630.1	3498	6e-24	65 - 123	100	59 / 59	minus	ABC12140
JLOC1	JLOC1_23611.2	3467	3e-24	3303 - 3361	100	59 / 59	plus
JLOC1	JLOC1_23611.1	3460	3e-24	3296 - 3354	100	59 / 59	plus
Harvest35	U35_18508	1966	3e-25	1885 - 1944	100	60 / 60	plus

Contig Sequence (1966 bp)

>U35_18508 1966 Hv_44K_v2
CTTGTACCAGGTAGAAATATTATCACCTTTGACATTCCTCCTCAAAAGCCAGGTTCCTAT
GTGTTGGGCGCTCTCACTGGACAGATTGGCAAGCTGTCATTCAGATCACATGGATTTTCT
CAAGATAGTCCAGTGGACACTGATGAATTCATGAGCTTTGAGAAGCCCACAAGACCTGTT
TTGAAGGTGAGAAAACCGAGGGCTTTGGTTGATATTACTCCTGCTGTATCCTCTGCATTG
CTTATGAATGAACTCCAGTGGATCGGGTTGATTGTCAAGCCTATAGACTATTCTTTGAAA
GGTGGCATACTGCATATAGATGCCGGTGCTGAACTAAAAATCGAGGAGTCGCAGATGATT
GAGATAGAAAGCTACAGAAGCGATGGGGATCATTCTGGTAATCTTGATGCTTCCAAAGCA
TTATCAAGGTCCACTGATACTGGAAGGGTTGAGAAGGTTCCTATCGGAAATGGGAAGATA
GAACTGCCAGATTGGGCTAGTGACGTGACAACTCTTGTTTGGTTCCCTGTTCGTGCTATC
GACGATACAATTGCAAAGGGAACATCCCCAGCATCCCCTCAGAAACATAGCATAGTAGAT
GGGATGAGAATGATTGCTCTCAAGCTTGAATTTGGAGCTTTCCATAATCAAATATTTGAA
AGGACCATTGCCGTACATTTCACTAATCCATTCCATGTGAGCACACGTGTTGTTGACAAG
TGCAATGATGGAACTCTACTTCTGCAGGTAATATTGCATTCTGAAGTGAAGGCTACTCTG
CATGTAAAGGATGTATTATTGGACCTACAAGCTGGATTTGAGCACCTAGGCAAGGGAGAT
GGACGTCCGACTTCGAGTTTGTTCCCTCTGGTTATTGCTCCTTCTTCCAAAGCTGGAATC
TTATTTGTGATACGTTTAAGTGGCACAAAAGACCTAGATGAGTTGGAACAGGCAGACAGC
ATGTTGAATATTAAATACGGGATATCCGGTGACCGAGCAACCGGAGCACACTCTCCAGTT
CCTGTTAAACCTGATGACTCTGAAGAGCTTCTGTTCAAGATTTCACTCAAACTGAAGCGC
CCTGTTCTGGATCCATGCCTGGCAGTTGGATTCCTTCCGTTTTCTACCGATTGCCTGAGG
GTTGGTCAATTAGTCAACATGAAATGGCGGGTTGAAAGGCTCAAGGACCTGGAGGAGGCA
TCTCTGTCCGATGATGAGATACTTTATCAGGTGGACGCTAATCCACAGAACTGGATGGTT
GCTGGGAGGAAAAGCGGTCACATTTCATTCTCAGAAACACAAGGATCAAGGATCGAGATC
GCCGTGACGTGTGTCCCGCTGGTGTCGGGGTATGTACACCCGCCACAGCTAGGCCTGCCC
GACGTAGGCGATGCGAATATCAGCTGCAACCCGGCAGGTCCCCACCTGGTGTGCGTGCTT
CCTCCCACCCTCAGCACCTCCTACTGCATACCGGCTTGATTCATGAGCCACCTCTGTGCC
ATTACGATAGCTGCTTAGAGCCTCCCCATTTGAGATACAAGGTGTTCTGTATTTGCCTGG
AGACTGTTCCTTTTTTCTATAGGTTACATGCACGGTGTATATTGATTGACTTGGTGCAAA
TCCGTATTCTCGTGATGAGTTGGGGGTTTAACCCTCGACATTTGAATTGCCCTGAGTAAC
GAGTCGAGGGTAAACCCTGAACATTTGTGTGTTTTGCTGTCTCCCTACGAAAAAGCTAGC
CGTTACAAGTGTTTGCTTTCTACTCTACTTGGTCACTGCTCACCAGAAGACGGTTTGTTT
CGGAGGAAAGCGGAATGAAGCAAGCGGAAGGAGCTCTCGTTTCAGCAAACAGAATCCTTG
GTTAAGCTTTTGATGTAAGTTTTGTGGCTGAGAACAGTATGTAACTCACAACCTATCTAC
AAAGCCAGAGCGCATACGAGTTCACAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18508 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g36760.1	1246	protein\|expressed protein
Brachypodium v1_2	Bradi4g05110.2	1246
Arabidopsis v10	AT5G54440.1	1259	\| Symbols: CLUB, AtTRS130 \| CLUB \| chr5:22100056-22107695 FORWARD LENGTH=1259