barSeed - Barley Seed Development Database

Probe CUST_5254_PI390587928

Source Contig U35_18509

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5254_PI390587928	Hv_44K_v2	TATCAAAAAATTGTATTTCCGTTATTAAAGTAACTGAAAGGGGTGTGGCCCGGTTGGAAA	1317	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.349	0.664	1.341	1.353	1.266	1.802
Raw	2.906	13.779	27.105	46.744	13.287	20.986

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45633.1	901	2e-24	370 - 429	100	60 / 60	minus	ABC09643
MLOC	AK248887.1	1322	3e-21	1266 - 1322	98	56 / 57	plus	ABC09643
JLOC1	JLOC1_29621.1	700	8e-25	169 - 228	100	60 / 60	minus
Harvest21	ABC09643	1437	3e-25	1318 - 1377	100	60 / 60	plus	ABC09643
Harvest35	U35_18509	1437	3e-25	1318 - 1377	100	60 / 60	plus

Contig Sequence (1437 bp)

>U35_18509 1437 Hv_44K_v2
CAGGATCCCAAACTGTACTCACATAAATAATGGTGCTCACCCGGGAGCAACGCACCGATC
AGGGTTTGCTCGATGCTCAGCTCGAGCTCTGGCACATCTCCTTTGGCTACGTCAAATCAA
TGGCACTAAAGTCCTGCTTGGACCTCGGCATCGCCGACGCCATCCACCACCATGGCGGTG
CCGCTACCCTCTCCCAAATTGGAGCTGTAGCTACGCTCCACCCGTCCAAGATCTGCTGCC
TGCGCCGCCTTATGCGTGTGCTCACTGTCTCCGGCGTCTTCAGCGTCCAGCAGCCCAGTC
CAAGGGACGACGTCCAAGTGGAGCTCGTCTACACACTCACAGCAGTGTCCCACCTCCTCG
TCAGCTCGGCCTCGGTGAACATTGTCCCCGTCATCAACCTGCAGCTCCAGCCCAACATCG
TCTCCTCCTTCTCTGAACTCGGGGCCTGGTTCCAGCACAAGCTGCCAGAACCAGACCTTT
TCAAGTTGAAGCACGGCAAAACCTTCTGGGAAATAGCCCACCATAATGCGGCATTCAACA
CCATCGTCAATGACGCCATGGCCTCCGATAGCCGGTTCCTCATGGACATCGCCATCAGGG
AGTGCGGCAGCGTCTTCGAGGGTATAGGCTCCCTGGTCGACGTTGCCGGAGGCCATGGTG
GGGCGGCACAAGCAATATCGAAATCGTTCCCGCACATCAAGTGCAGCGTGATGGACCTCG
GCCATGTCATTGCCGGGGCTCCTAGTGGCACCGACGTGCAGTACATTGCGGGCGACATGT
TTGAGAGCATTCCACAGGCAGATGTTGTCTTCCTAAAGTGGATTATGCATGATTGGAGCG
ACGATGACTGCATCAAAATACTAAAAAATTGCAATAAAGCTATCGCTCCAAAAGATGCTG
GCGGAAAGGTGATAATTGTAGACATGGTGGTTGGTGGAGGCCCGCAAGACCTGAAGCACA
AAGAGACACAAGTCTTGTTCGATCTTTACATCATGCTCCTCAATGGCATCGAACGAGATG
AGCAGGAGTGGAAGAAGATAATCATGGCGGCAGGATTCAGTGACTTCAAAATCACCCCGA
TTCTGGGTGTCCGATCAATCATTGAGCTTTACCCGTGAACATCTGGTCCTTCACTAGTGA
TTCAAGTGTGCGTGTGGATTTTATTTCCGTCCAACTATCACAGTGACCCAATTTCTTGAG
ATGTCATAGTGATAACAGGTTTTCGCCCCATAAGAAATGTTTTTAGTACAAGTATTTCTA
GCGGGTTTCATGTTATTGCTCCCAGCTCGCCTCCCTTCCTTCCCATCAACTATGCTCTAT
CAAAAAATTGTATTTCCGTTATTAAAGTAACTGAAAGGGGTGTGGCCCGGTTGGAAAAAA
AAGCAGGGTGGTCCTGTGTGTGAGGCCAGCCCTTTAGTGTTAAAAAAAAAAAAAAAA

Homology of Contig U35_18509 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g25490.1	365	3e-136	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g19857.2	362	9e-139
Arabidopsis v10	None