- Probe CUST_5249_PI390587928
- Source Contig U35_20824
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5249_PI390587928 | Hv_44K_v2 | AAGTCCAGCTTTCTGTGTCTGAATGTAAAATGCCAGGCATAAGAATTTCTTGAGAAAAAA | 899 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.227 | 1.357 | 1.269 | 0.965 | 0.287 | 0.327 |
| Raw | 835.594 | 1440.732 | 1174.497 | 1392.732 | 148.167 | 182.249 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_79742.1 | 435 | 3e-22 | 380 - 435 | 100 | 56 / 56 | plus | ABC14139 |
| MLOC | MLOC_79741.10 | 1888 | 3e-22 | 1833 - 1888 | 100 | 56 / 56 | plus | ABC14139 |
| MLOC | MLOC_79741.1 | 2530 | 3e-22 | 2452 - 2507 | 100 | 56 / 56 | plus | ABC14139 |
| MLOC | MLOC_79741.2 | 2668 | 3e-22 | 2590 - 2645 | 100 | 56 / 56 | plus | ABC14139 |
| MLOC | MLOC_79741.5 | 2558 | 3e-22 | 2497 - 2552 | 100 | 56 / 56 | plus | ABC14139 |
| MLOC | MLOC_79741.6 | 2696 | 3e-22 | 2635 - 2690 | 100 | 56 / 56 | plus | ABC14139 |
| MLOC | MLOC_79741.3 | 2757 | 3e-22 | 2672 - 2727 | 100 | 56 / 56 | plus | ABC14139 |
| MLOC | MLOC_79741.4 | 2619 | 3e-22 | 2534 - 2589 | 100 | 56 / 56 | plus | ABC14139 |
| JLOC1 | JLOC1_53105.4 | 2607 | 1e-22 | 2512 - 2567 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_53105.3 | 2485 | 1e-22 | 2390 - 2445 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_53105.2 | 2677 | 1e-22 | 2582 - 2637 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_53105.1 | 2539 | 1e-22 | 2444 - 2499 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC14139 | 970 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC14139 |
| Harvest35 | U35_20824 | 970 | 3e-25 | 900 - 959 | 100 | 60 / 60 | plus |
Contig Sequence (970 bp)
>U35_20824 970 Hv_44K_v2 GGTTGGAGCTATGCCGGCTATCAAGATGATACCGACTTCGGTCCTCTGGGGTTACTTTGC CTACATGGCCATTGATAGCCTACCTGGGAACCAGTTTTGGGAAAGGTTACAGCTTCTGTG CATTGGAGCAAGCCGACGCTACAAGGTCTTGGAAGGCCCCCATGCATCTTTCGTGGAGGC GGTGCCTTCAAGAACAATATCTGCCTTTACGGTCTTCCAGTTTGTGTATCTCTTGATATG CTTCGGTATAACATGGATACCAGTAGCAGGGATCCTCTTCCCGCTGCCTTTCTTCATTAT GATTCTCATCAGGCAACACCTACTCCCAAAGTTCTTTGAGCCCAATGACTTGCGAGAACT GGATGCAGCTGAGTATGAAGAACTTGAAGGCGTCCCACATGAACAAACACTGGAGGAAGA TGGCTCAAATTCAGGAAGCCATGACAGCATAGACGACGCTGAAATGTTGGATGAACTCAC GACAAACCGTGGAGAGCTGAAGCACAGATCTGCAAGCCATCCTGAAGAAAGGCACCTTCA GGTCCATTCAAATGCAGTTCAGCCGAGCGTGTGAAGATGGAAAAACGTCCCGATGTCCGA GGCTTTGATGACGATTCTGTCAGAAGTGTAGATTATCCTGAAGCCATTGTTCATTTCCGA ATACGCCATTGTTCAGCAATGTGCATTGTACTGTAGCTAGCGCTTTTCCGGTAAGGCGTG ATCGTGTACGCTAGGAAGTAAAGCTCAGGTAATTAGCAGTGAGATCAGACTGAAGAAAGT GTATTGGATATGGCAGGGGAACTTGGCAGAATAGTATTAGTAATGGTTAGAAGTAGAAAG ACTGTTGCTCCGTGACCTGTTATTGCAAGACTGTTGCTCTGTGACCTGTTGCCTGTGTAA AGTCCAGCTTTCTGTGTCTGAATGTAAAATGCCAGGCATAAGAATTTCTTGAGAAAAAAA AAAAAAAAAA
Homology of Contig U35_20824 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g08020.1 | 673 | 2e-101 | protein|boron transporter protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g04690.1 | 667 | 7e-110 | |
| Arabidopsis v10 | AT1G15460.1 | 683 | 2e-67 | | Symbols: ATBOR4, BOR4 | HCO3- transporter family | chr1:5310196-5313376 REVERSE LENGTH=683 |