barSeed - Barley Seed Development Database

Probe CUST_5247_PI390587928

Source Contig U35_20826

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5247_PI390587928	Hv_44K_v2	CTTTCTTGGAGCTTTTTTCCAGCTCATTGGAGAATAAGCAAGTTCCCATAGATTATATAT	814	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.300	4.547	1.507	0.676	0.875	0.705
Raw	45.689	61.863	17.560	11.721	4.465	3.250

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356324	1064	2e-24	911 - 970	100	60 / 60	plus	ABC14024
MLOC	MLOC_39722.1	875	2e-24	98 - 157	100	60 / 60	minus	ABC14024
MLOC	MLOC_39722.2	739	2e-24	34 - 93	100	60 / 60	minus	ABC14024
JLOC1	JLOC1_25915.1	821	8e-25	548 - 607	100	60 / 60	plus
Harvest21	ABC14024	908	3e-25	815 - 874	100	60 / 60	plus	ABC14024
Harvest35	U35_20826	908	3e-25	815 - 874	100	60 / 60	plus

Contig Sequence (908 bp)

>U35_20826 908 Hv_44K_v2
GACTCCGCACCATGGAGCTCTCATCCCTCCTGCCCTCCCTGTCCCCGCGCCCGCTCTCCT
TCTCCACCGCGTCCAAGACGGCCCGGCGGCCACGGCCGACCGCCTTCGCCTGCCGCGCGG
ACGCCTCCCCGGAAGGGTCATCAACCTCAACCACCCGGCGATGGTTCGCCTCGCTAGCCG
CCGCCACCGCAGCCGTGGGGATTGACGTCGCCCGGGTAGGGGAGGCTGGCGCCGTGTCGA
CCAGCAGGAGAGTTTTTAGGAGCAACAAGATTCCGGAGAGCGACTTCACCACTCTGCCTA
ATGGCATCAAGTACTATGACATCAAAGTAGGAGGTGGGGCTAAAGCAGTTAAGGGATCGC
GCGTCGCGGTACATTACGTGGCCAAGTGGAAGGGCATAACATTCATGACAAGCAGGCAGG
GCCTCGGTGTCACTGGTGGAACGCCATATGGGTTTGATGTTGGCAATTCTGAAAGAGGCA
ATGTTCTAAAAGGATTGGATCTCGGGGTTGAGGGAATGAAAGTTGGTGGCCAGAGGTTGG
TCATTGTTCCTCCGGAGCTAGCTTATGGAAAAAAGGGCGTTCAAGAAATTCCTCCTAATG
CAACTATTGAGCTGGATGTCGAACTACTATCAATCAAACAGAGTCCATTTGGGAGTCCTG
TGAAGATCGTTGAAGGATAATTGTGCATTGACTTCTTCAGAAAATGATGTATATTTGAAC
ATTCTGGAGAGTGTTACTGCAAGAAAGGGGTCTAGATGTACCAGATTTCAGTGTTGCTGT
TGCGTACATAAGTGCACCATAGTGTAATATTTTTCTTTCTTGGAGCTTTTTTCCAGCTCA
TTGGAGAATAAGCAAGTTCCCATAGATTATATATATTCAGTTCATTTTTGCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_20826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g09040.1	553	8e-69	protein\|peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
Brachypodium v1_2	Bradi1g54970.1	219	9e-103
Arabidopsis v10	AT3G10060.1	230	5e-82	FKBP-like peptidyl-prolyl cis-trans isomerase family protein \| chr3:3102291-3103801 FORWARD LENGTH=230