barSeed - Barley Seed Development Database

Probe CUST_5239_PI390587928

Source Contig U35_13720

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5239_PI390587928	Hv_44K_v2	TTGTATTACTGACCTTGATTGATGCGTCGTCGGTGCTGTGCTGTTTGTCCGTTTAAAAAA	761	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.980	1.562	1.798	1.470	0.475	0.310
Raw	857.174	2134.163	2139.790	2738.282	311.883	219.677

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353945	1203	3e-21	1146 - 1199	100	54 / 54	plus	ABC04741 ABC04743
MLOC	MLOC_51050.1	1207	3e-21	1055 - 1108	100	54 / 54	plus	ABC04741 ABC04743
MLOC	MLOC_51050.2	1196	3e-21	1044 - 1097	100	54 / 54	plus	ABC04741 ABC04743
JLOC1	JLOC1_32575.2	1213	2e-21	1050 - 1103	100	54 / 54	plus
JLOC1	JLOC1_32575.1	1207	2e-21	1044 - 1097	100	54 / 54	plus
Harvest21	ABC04741	1112	3e-25	1042 - 1101	100	60 / 60	plus	ABC04741
Harvest21	ABC04744	986	5e-23	27 - 85	98	58 / 59	minus
Harvest35	U35_13720	832	3e-25	762 - 821	100	60 / 60	plus
Harvest35	U35_13724	1178	1e-23	1096 - 1156	98	60 / 61	plus

Contig Sequence (832 bp)

>U35_13720 832 Hv_44K_v2
TTCGGGATGCTAACCGAGGGTGAGAGATCCTTGGTCGAGCGCGTCAGGCAAGAGCTGAAG
CACGAGCTTAAACAGGGGTACAGAGAAAAGCTTGTGGACATCAGGGAAGAGATACTCCGG
AAGCGAAGGGCCGGGAAGCTCCCGGGAGACACGGCGTCCACCCTGAAGGCTTGGTGGCAA
GCCCACGCGAAATGGCCGTACCCAACTGAGGAGGACAAGGCGCGGCTGGTGCAGGAGACG
GGGCTGCAGCTGAAGCAGATCAACAACTGGTTCATCAACCAGCGCAAGCGGAACTGGCAC
AGCAACCCGACCTCGTCCTCGTCGGACAAGAGCAAGAGAAAAAGGAACAATGCAGGTGAC
GGCAACGCGGAGCAGTCCTGGTAGGGCGGCCGGAGACGAAGAACGATCGAACCCGTTGTA
TGTACATAGCGCTTCCATCTTGGAGAAGGCTTGATATATTTATTGGTCCGGGGAGATACG
ACACGACGCGACGGCGGTCATTTGCGCCGGAGTCGTCTCCCGGACCTCAACACCGTCTCC
GTCTGTACTGTACCCCAAAAAGAAAAAAGAAAAAACATGTAGTGGTAATGTACCCGTAGC
TGTTTTTGTGGCGTGCTGCGTGTTGGGAGGACGCGGCGTCGTGAGTTTGTATACGGGCTG
TTCCGTAACGTGTGTCGTGGATTTGTGTGTTGTGTTGTGTTGCGTTACCGTGGGAACGGT
GGCAAGGGCTGCGTGGGTGATGTATGTTTGTGTACCTGTATTTGTATTACTGACCTTGAT
TGATGCGTCGTCGGTGCTGTGCTGTTTGTCCGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13720 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43860.1	324	9e-73	protein\|homeobox protein knotted-1, putative, expressed
Brachypodium v1_2	Bradi1g30730.1	318	1e-74
Arabidopsis v10	AT5G25220.1	431	1e-60	\| Symbols: KNAT3 \| KNOTTED1-like homeobox gene 3 \| chr5:8736208-8738115 FORWARD LENGTH=431