barSeed - Barley Seed Development Database

Probe CUST_5237_PI390587928

Source Contig U35_13722

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5237_PI390587928	Hv_44K_v2	TTTTGTGCCTTTGTGGTGCTGGCTGTAGGCTCTTGAATCTAATGATAATAGCCTTGCCTC	914	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.044	2.682	1.934	0.887	0.338	0.347
Raw	298.915	1222.583	749.411	546.004	71.952	81.812

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69381.1	1726	2e-24	1625 - 1684	100	60 / 60	plus	ABC14822
JLOC1	JLOC1_45965.1	1630	8e-25	1533 - 1592	100	60 / 60	plus
Harvest21	ABC14822	769	3e-25	692 - 751	100	60 / 60	plus	ABC14822
Harvest35	U35_13722	992	3e-25	915 - 974	100	60 / 60	plus

Contig Sequence (992 bp)

>U35_13722 992 Hv_44K_v2
TTTTTTTTTTTTTTTTTACAGCAGTTAAACCATTCCAAAGTTTTTTTACTTAGGGGGGTA
AAACACAGTATATGCTCTCCGTCCATCTCTTCCATCAGAGCTGGTCTCGACCTGTAACAA
CGACGACACACTGGCTGGCTAAGGTGCCCTCAAGCTGCTCAAGGCGCTACTAGCACTCTC
CCTCCGTAGGTAGATTATGTAGATAGGACAGCTCGCCGACGGATCATTATCTGTAGTTCT
TGACGAACATGTTCTCTTTGGCAGCTGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCT
GCGCCAGGGAGTTGGCCTTGGCGCGCAGCAGCAGCGCCTCCTCGGCGGCGCGCCGGAGCG
CGATCTCCTGTTCCAGGCCCCGCCGACGCTGAACGCGTTCGACATCATAAGCATGTCGCC
GGGGCTCGACCTGTCGGGACTCTTCGGCGAAAACCGGCGGAGCCGTGAGAAGCGGTTCAT
GACGACGGCGTCGCCGGAGCAGATGGTCGAGCAGCTCGGGCACTCGGGTGCAAAGCTCGG
TTACTTCATGGTGGGCAAGAAAGGAGTAGAGCGGCTGCCACTAGGCGGCCTGTCGGGGCT
CGTGGCCATGTCCATGGAGATGTCGGAGGTGGCGCCGCCCCTGATGCTCGTCGAGCTGAG
GCTGGAGGCCGGCGACGACGAGGAGGTCGAGAAGTTCGGATGGGACGAGCTTAGGACGGA
GCTCGGGGAGGTGGTCATGGCGTGGCATGGATGCGAGGAATTGTGAGGAGTTGGGGGATG
TACATGTATGATCTGATCTGATGCCAGAAAGAGCTAACTAGGACTTTGTGGCAGATTGAA
GGGGGTAGATTTGTTAGTTCATTCACTCTGATTTTGATGTTTGTGATTAGAAATTTTGTG
GGAATGAATCTAGATTTTGTGCCTTTGTGGTGCTGGCTGTAGGCTCTTGAATCTAATGAT
AATAGCCTTGCCTCNAAAAAAAAAAAAAAAAA

Homology of Contig U35_13722 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43440.1	448	3e-67	protein\|CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g14200.1	436	7e-82
Arabidopsis v10	None