barSeed - Barley Seed Development Database

Probe CUST_5235_PI390587928

Source Contig U35_13724

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5235_PI390587928	Hv_44K_v2	TGTATTTGTATTACTGACCTTGATTGATGCGTCGTCGGTGCTGTGCTGTTTGTCCGTTTC	1090	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.931	1.507	1.728	1.402	0.459	0.316
Raw	786.817	1978.536	1968.730	2471.016	290.306	215.726

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353945	1203	2e-24	1141 - 1200	100	60 / 60	plus	ABC04741 ABC04743
MLOC	MLOC_51050.1	1207	2e-24	1050 - 1109	100	60 / 60	plus	ABC04741 ABC04743
MLOC	MLOC_51050.2	1196	2e-24	1039 - 1098	100	60 / 60	plus	ABC04741 ABC04743
JLOC1	JLOC1_32575.2	1213	8e-25	1045 - 1104	100	60 / 60	plus
JLOC1	JLOC1_32575.1	1207	8e-25	1039 - 1098	100	60 / 60	plus
Harvest21	ABC04744	986	3e-25	31 - 90	100	60 / 60	minus
Harvest21	ABC04741	1112	1e-24	1037 - 1095	100	59 / 59	plus	ABC04741
Harvest35	U35_13724	1178	3e-25	1091 - 1150	100	60 / 60	plus
Harvest35	U35_13720	832	1e-24	757 - 815	100	59 / 59	plus

Contig Sequence (1178 bp)

>U35_13724 1178 Hv_44K_v2
GCCACCCCCGTCGACCAGCTCCCCCGCATCGACGCGCAGATCGCCGCGCGCGCCCCGCCT
CCCATGCCCCCCGCCAGCGCGCTCTCCGGCGGCGAGGAGCTCGACCTCTTCATGACACAC
TACGTGCTCCTCCTCTGTTCCTTCAAGGAACAGCTCCAGCAGCATGTGCGCGTCCACGCC
ATGGAAGCGGTGATGGCTTGCTGGGAGCTCGAGCAGACTTTACAGAGTCTTACAGGGGCA
TCTCCTGGCGAAGGCACCGGGGCAACTATGTCTGATGATGAAGACAACCCGGTCGACAGC
GAGAGCAACATGTTCGACGGAAACGACGTGTCCGATGGCATGGGCTTCGGGATGCTAACC
GAGGGTGAGAGATCCTTGGTCGAGCGCGTCAGGCAAGAGCTGAAGCACGAGCTTAAACAG
GGGTACAGAGAAAAGCTTGTGGACATCAGGGAAGAGATACTCCGGAAGCGAAGGGCCGGG
AAGCTCCCGGGAGACACGGCGTCCACCCTGAAGGCTTGGTGGCAAGCCCACGCGAAATGG
CCGTACCCAACTGAGGAGGACAAGGCGCGGCTGGTGCAGGAGACGGGGCTGCAGCTGAAG
CAGATCAACAACTGGTTCATCAACCAGCGCAAGCGGAACTGGCACAGCAACCCGACCTCG
TCCTCGTCGGACAAGAGCAAGAGAAAAAGGTGACGGCAACGCGGAGCAGTCCTGGTAGGG
CGGCCGGAGACGAAGAACGATCGAACCCGTTGTATGTACATAGCGCTTCCATCTTGGAGA
AGGCTTGATATATTTATTGGTCCGGGGAGATACGACACGACGCGACGGCGGTCATTTGCG
CCGGAGTCGTCTCCCGGACCTCAACACCGTCTCCGTCTGTACTGTACCCCAAAAAGAAAA
AAGAAAAAACATGTAGTGGTAATGTACCCGTAGCTGTTTTTGTGGCGTGCTGCGTGTTGG
GAGGACGCGGCGTCGTGAGTTTGTATACGGGCTGTTCCGTAACGTGTGTCGTGGATTTGT
GTGTTGTGTTGTGTTGCGTTACCGTGGGAACGGTGGCAAGGGCTGCGTGGGTGATGTATG
TTTGTGTACCTGTATTTGTATTACTGACCTTGATTGATGCGTCGTCGGTGCTGTGCTGTT
TGTCCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13724 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43860.2	318	4e-134	protein\|homeobox protein knotted-1, putative, expressed
Brachypodium v1_2	Bradi1g30730.2	306	2e-139
Arabidopsis v10	AT5G11060.1	393	2e-115	\| Symbols: KNAT4 \| KNOTTED1-like homeobox gene 4 \| chr5:3510408-3512967 FORWARD LENGTH=393