barSeed - Barley Seed Development Database

Probe CUST_5234_PI390587928

Source Contig U35_13725

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5234_PI390587928	Hv_44K_v2	GTCATGAAAGTTACCAATAATATTTTGCTCATCAGCCGCAATGCTGATATTGAGACAAAA	1744	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.416	1.510	1.110	0.976	0.455	0.475
Raw	603.379	1047.126	655.202	905.380	146.466	166.976

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75446.1	433	7e-23	11 - 67	100	57 / 57	minus	ABC06621
JLOC1	JLOC1_50332.1	1143	4e-23	721 - 777	100	57 / 57	minus
Harvest21	ABC06621	1817	3e-25	1745 - 1804	100	60 / 60	plus	ABC06621
Harvest35	U35_13725	1817	3e-25	1745 - 1804	100	60 / 60	plus

Contig Sequence (1817 bp)

>U35_13725 1817 Hv_44K_v2
GTAAAAGGTGTTGATGAAGCCAAAGCTGAGCTCGAGGAAATAGTTCACTACCTTCGAGAT
CCAAAGCGTTTTACACGTCTTGGGGGAAAACTGCCAAAAGGTGTTCTGCTTGTTGGCCCT
CCTGGCACTGGCAAGACCATGTTAGCGAGGGCTATTGCTGGGGAAGCCAGCGTCCCTTTT
TTCTCGTGCAGTGGTAGTGAGTTTGAGGAGATGTTTGTAGGCGTGGGAGCTAGAAGAGTG
AGGGATCTTTTTGCTGCAGCAAAAAAACGATCGCCTTGTATCATATTTATTGATGAAATC
GACGCAATTGGTGGGAGTAGAAATCCAAAGGATCAGCAGTATATGAAGATGACCTTGAAT
CAGTTGCTTGTTGAGCTGGATGGCTTTAAGCAGAATGAGGGGATAATCGTCATCGCTGCA
ACTAACTTCCCTGAGTCATTAGATAAAGCACTAGTCAGACCTGGGCGCTTTGATCGTCAT
ATTGTTGTTCCCAATCCAGATGTTGAGGGCAGACGTCAAATCTTAGAGGCCCACATGTCA
AAGGTTTTAAAGGGTGATGATGTGGATTTGATGATCATCGCCAGGGGAACACCGGGATTT
TCAGGTGCCGACCTTGCTAACTTGGTGAATGTGGCTGCTCTTAGGGCTGCCATGGATGGT
GCAAAATCCGTTAGCATGAATGATCTTGAGTATGCCAAGGACCGGATCATGATGGGTAGT
GAGCGCAAGTCAGCAGTTATCTCTGATGAGTGCAGGAAACTGACAGCATACCATGAAGGA
GGGCATGCCCTTGTTGCCATGCACACTGATGGTGCGCACCCTGTCCACAAAGCTACCATC
GTGCCCAGGGGGATGGCCCTTGGGATGGTGGCTCAACTCCCTGACAAAGACGAGACTAGT
GTGTCAAGGAAACAGATGCTAGCAAGATTGGATGTGTGCATGGGAGGACGGGTGGCAGAG
GAGCTTATATTTGGGGATAGCGAGGTGACATCTGGTGCTTCATCCGACTTTGAGCAAGCA
ACTTTGATGGCAAGGGCAATGGTTACCCAGTATGGTATGAGCAAGCAGGTGGGTCTTGTT
TCGTACAACTATGAAGATGACGGAAAGACTATGAGCTCAGAAACGAGGCTTCTAATTGAG
GAGGAGGTGAAGAATTTCTTGGAGAGAGCATACAACAATGCAAAGGCTATCCTCACCAAA
CACAACAAGGAACTCCATGCTCTAGCCAATGCACTTCTTGAGCATGAGACCATGAGCGGA
ACCCAAATAAAGAACTTGTTGGCCCAAGTAGATAACAAACAGCCGCAGCAGGGTCATGCT
GTTGAAGCCCCACAGAAGGCGCCAGCTTCACCCCCATCTCCAGCGGCAGCGGCGGCAGCG
GCTGCCGCCGCGGCAGCACAACAAGCGGCAGCGCAAGCCAAGGGAGTTGCTGGTATCGGG
TCTTAGCATCCACATGTTTGCATTGTGTATATTAATTCACCAAATTAGCAGGTTGTTCCG
TCAAACTGTCAACTGATGAGCATCCCCCAGGAAGAATATGCTACACTGCTGCATCACCAC
GAGGACACATGGATGTTGCTTGGGGTGTGAATAGAGAAAGAAACACATGGAAGAAATGCA
CACATAGTAGCAGGCAGATGTAAGCTAGTGTTCGAGTGATTTTTCTACTTGTGCTGTTGA
TAACTTCACATCTCAATAATTGTTATCGTTAAAATCTGCCTTGTATTTGTACGATACACG
TTTGGTCATGAAAGTTACCAATAATATTTTGCTCATCAGCCGCAATGCTGATATTGAGAC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_13725 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g39260.1	716	protein\|OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
Brachypodium v1_2	Bradi2g41610.1	705
Arabidopsis v10	AT2G26140.1	717	\| Symbols: ftsh4 \| FTSH protease 4 \| chr2:11131939-11135126 REVERSE LENGTH=717