- Probe CUST_5229_PI390587928
- Source Contig U35_25700
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5229_PI390587928 | Hv_44K_v2 | TATAGACCTGCACTGTAACTACTTGATAAATAGAAGCTGATTGTTAGCGGCCGCTCGAGC | 328 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.904 | 2.109 | 1.275 | 0.689 | 0.266 | 0.285 |
| Raw | 97.968 | 162.700 | 91.706 | 76.902 | 9.962 | 12.081 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_25700 | 388 | 3e-25 | 329 - 388 | 100 | 60 / 60 | plus |
Contig Sequence (388 bp)
>U35_25700 388 Hv_44K_v2 GCAGGAGGCTTCCACCGGGCAGGACGGATGACGAATCTGTTGACCTTGAGGCATCAGAGG ATCAGTCATCTGCCTCTGGCCATCAGTGACAGGAATCAGTTGGCAGTGTCTCTGAACTTC CAGACGTCTGACGGAAACTAACAAAATTTCTCCTTACTGTCGTTCCTGGCTCGTCTTCTT TGGATTTGTACAATTTTTTTTTGTTTTGTTGATATGAAAAGTACCGGATCAAGCATGCAA CTTGTGGATAGGAAGGTGATGTTTTGAGCAGTTTTGTGTATGGTGAGTGCTGACTGGTGT CTGAGGGCTGTCAATAGTAACTGTGTTGTATAGACCTGCACTGTAACTACTTGATAAATA GAAGCTGATTGTTAGCGGCCGCTCGAGC
Homology of Contig U35_25700 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |