barSeed - Barley Seed Development Database

Probe CUST_5225_PI390587928

Source Contig U35_25705

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5225_PI390587928	Hv_44K_v2	TTATCGTCGGTGGGTGCGTCATGCTGTTCGCGGTCGTGGCGGTGCTGCTGATAGCCTTCT	403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363404	2478	2e-24	1163 - 1222	100	60 / 60	plus	ABC18208
MLOC	MLOC_65924.1	2811	2e-24	1458 - 1517	100	60 / 60	minus	None
JLOC1	JLOC1_43413.1	1923	8e-25	767 - 826	100	60 / 60	minus
Harvest21	ABC25301	549	3e-25	404 - 463	100	60 / 60	plus
Harvest35	U35_25705	551	3e-25	404 - 463	100	60 / 60	plus

Contig Sequence (551 bp)

>U35_25705 551 Hv_44K_v2
CTCCAGCGCAACGCATTCTCCGGCGCCCTGCCGTCCGGCATCGCGGGGCTGAAAACGCTG
CAGGTGCTCGACCTCTCCTTCAACGGCTTCAACGGGACCCTGCCCTGGGGCCTGTCCAAC
CTCACCCAGCTCGTCGCGCTCAACCTCTCCAACAACTCGCTCTCCGGCCGCGTCCCGGAC
CTCGGCCTCCCGGCGCTGCAGTTCCTCAACCTCTCCAACAACCACCTCGACGGCCCCGTG
CCCAGGTCCTTCCTCAGGTTCTCGGACGCCTCCTTCGCCGGGAACAGCATGACGCGGTCG
GCGCCGTTGTCGCCAGCGGTTCCTCCACCGTCACTCGCCCCGCCGGCGGCCGGCGCGCCC
GCCAAGAAACGGGCGCGGCTCAGCGAGGCGGTCGTTCTCGCCATTATCGTCGGTGGGTGC
GTCATGCTGTTCGCGGTCGTGGCGGTGCTGCTGATAGCCTTCTGCAACCGGCGGGGCGGC
AGCGAGGACGGGAGCCGGACGTTGTCCGGGAAGGGCGGGGACAAGAAGGGGAGGGAGTCG
CCGGAGTCCAA

Homology of Contig U35_25705 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12390.1	642	4e-62	protein\|inactive receptor kinase At2g26730 precursor, putative, expressed
Brachypodium v1_2	Bradi2g07330.1	638	8e-65
Arabidopsis v10	None