barSeed - Barley Seed Development Database

Probe CUST_5220_PI390587928

Source Contig U35_13732

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5220_PI390587928	Hv_44K_v2	GATGGGTTTTGTATCCTCTTTGCCAGATCTGTACATAACTACATATACAATATTGTGGTA	1268	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364142	1740	2e-24	1654 - 1713	100	60 / 60	plus	ABC02776 ABC33487 ABC37832
MLOC	MLOC_19075.1	758	2e-24	680 - 739	100	60 / 60	plus	ABC02776 ABC37832
JLOC1	JLOC1_13225.1	984	8e-25	735 - 794	100	60 / 60	plus
Harvest21	ABC37832	550	3e-25	45 - 104	100	60 / 60	minus	ABC37832
Harvest21	ABC02776	1331	3e-25	1246 - 1305	100	60 / 60	plus	ABC02776
Harvest35	U35_13732	1358	3e-25	1269 - 1328	100	60 / 60	plus

Contig Sequence (1358 bp)

>U35_13732 1358 Hv_44K_v2
GTTCCTCCAAGCACTTCATTTCAACGCCGTCCGCGGCGCCGATGGCAGCCTCGTCAACAT
GTCCGTGCCCATCGTCCTCGCCCTCGACGACGCCCAGCGCCGCGCCATCCAGGCCTCCGC
CGCCACCAGCGTCGCGCTCGTCGACGCCCACGACCGCCCCGTCGCCGTCCTCCGCGATAT
TGAGATCTACAAGCATAACAAGGAAGAAAGAATTGCACGGACTTGGGGAACAACTGCACG
TGGACTGCCGTACGTAGAGGAGGCGATTACAAACGCTGGTGATTGGTTGATTGGTGGAGA
CCTGGAGGTTATAGAACCAATCAAGTATAATGATGGCCTGGATCAGTATCGTTTGTCTCC
AGCACAGCTGCGTGAAGAATTTGCCAGGCGCAATGCAGATGCAGTGTTTGCTTTTCAACT
TCGTAACCCTGTGCACAATGGGCATGCGTTGCTCATGACTGATACACGGAGGCGTCTTCT
TGAGATGGGCTACAAAAACCCTGTTCTTCTTCTCCATCCACTGGGAGGATTCACAAAAGC
AGATGACGTGCCTCTTAGTGTGAGAATGAAGCAGCATGAGAAGGTTCTTGAGGAAGGTGT
CCTAAACCCAGAATCAACTGTGGTTGCAATCTTCCCCTCTCCAATGCACTATGCTGGGCC
AACTGAGGTGCAGTGGCATGCTAAGGCTCGTATAAATGCTGGTGCAAACTTCTATATTGT
CGGAAGAGACCCTGCTGGTATGGGCCACCCGACCGAAAAGAGGGACCTTTATGATGCTGA
TCATGGGAAAAAAGTACTGAGCATGGCTCCTGGGCTTGAGAGGCTCAATATCCTTCCTTT
CAAGGTGGCTGCATACGACACAAAGCATAACAAGATGAATTTCTTCGACCCATCAAGGAA
AGAGGACTTCCTGTTCATCTCTGGCACAAAGATGCGCAGCCTTGCCAAGAATCGCGAGAG
CCCACCCGACGGTTTTATGTGCCCGGGTGGCTGGAAGGTCCTCGTCGAGTACTACGACAG
CTTGGCGCCTCCAGAAGGCAGCAGCAAACTGCGAGAGGCGGTTGCGGCTTAGAAGCTGAA
AGACGCCTCGGATAAGTAGTACCGATGTATCTCGTGTCATGAACCAATGATATATGATTG
TATATTGGTGGTAAGAATCGACATTTGGGCATGAACCCCAGCACTCCCCGTGTGGTTTGT
ACTGCATACTAGTATCTGCTAGCAGTGTTACCCCCTGGAGCCCATCATGTGCTTGTGGTG
CCAATAAGGATGGGTTTTGTATCCTCTTTGCCAGATCTGTACATAACTACATATACAATA
TTGTGGTAATTTATCTATGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13732 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g53230.1	478	protein\|bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed
Brachypodium v1_2	Bradi1g09030.1	467
Arabidopsis v10	AT3G22890.1	463	\| Symbols: APS1 \| ATP sulfurylase 1 \| chr3:8112837-8114734 FORWARD LENGTH=463