barSeed - Barley Seed Development Database

Probe CUST_5219_PI390587928

Source Contig U35_13733

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5219_PI390587928	Hv_44K_v2	GCTCATGTACTATTTAGTTTATATCTTGTGCTTGAATTGCTTGCTTGCAGTTTTGCAATG	1024	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69214.1	256	2e-24	87 - 146	100	60 / 60	plus	ABC28899
JLOC1	JLOC1_45853.1	429	8e-25	298 - 357	100	60 / 60	plus
Harvest21	ABC28899	186	4e-24	119 - 176	100	58 / 58	plus	ABC28899
Harvest35	U35_13733	1110	3e-25	1025 - 1084	100	60 / 60	plus

Contig Sequence (1110 bp)

>U35_13733 1110 Hv_44K_v2
AAATACCGACCCCCTCCCAGCTTCCAATCCTCACCACCGCTCGCCGCAACGGAACCAACA
AATCCCCAACCAATCTCGTCTCCAATCGACCCGAGGCTCGTCGAATCCTCCTCCCCCGCC
GCTTCAAGATGCAGATCTTTGTGAAGACATTGACGGGCAAGACCATCACCCTTGAGGTGG
AATCCTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTC
CGGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACCCTCGCTG
ACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGTCTTAGGGGTGGCATGC
AGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGAGCTCTGACA
CTATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGC
GCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTGCTGACTACAATATCC
AGAAGGAGTCCACCCTTCACCTTGTCCTCCGCCTTCGGGGAGGCATGCAGATCTTCGTGA
AGACCCTGACTGGGAAGACCATCACTCTGGAGGTGGAGAGCTCAGACACCATCGACAATG
TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTG
CCGGCAAGCAGCTGGAGGATGGTCGGACCCTTGCGGACTACAACATCCAGAAGGAGTCTA
CCCTTCACCTGGTGCTCCGCCTCCGTGGTGGTCAGTAATTGCCCTAGCGTTGGAAGTCCT
GGGTCGTCCGGTGGGCGGTGCCCTGTCTGTTCAATTGAACTGTTTTCTCGTTTGCGTCTG
TCCTCCTGTGGTTGGTTTAATGAACTATAGAGTCACCGTGTTATGTGTGGTTTAAACTGT
TGCTGGTACAGCAGTATCATCAACTAATGAATAAGTGAACTTCATATAAAAAAAAAAAAA
AAAAGCTCATGTACTATTTAGTTTATATCTTGTGCTTGAATTGCTTGCTTGCAGTTTTGC
AATGATCTTGTATTAAAAAAAAAAAAAAAA

Homology of Contig U35_13733 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46770.6	306	1e-147	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.2	230	2e-148
Arabidopsis v10	AT4G05050.1	229	1e-148	\| Symbols: UBQ11 \| ubiquitin 11 \| chr4:2588271-2588960 REVERSE LENGTH=229