barSeed - Barley Seed Development Database

Probe CUST_5214_PI390587928

Source Contig U35_13738

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5214_PI390587928	Hv_44K_v2	CCTCTGTAAGCTTTTATAAGACAGTCGATGAAAAAAGAAGGGTGAAAAAACACATTTGGT	1378	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.021	2.094	1.082	0.931	0.527	0.364
Raw	41.383	68.773	31.051	41.897	7.795	5.738

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69007.3	2016	2e-24	1952 - 2011	100	60 / 60	plus	ABC01064
JLOC1	JLOC1_45707.2	2786	8e-25	2678 - 2737	100	60 / 60	plus
JLOC1	JLOC1_45707.1	2454	8e-25	2346 - 2405	100	60 / 60	plus
Harvest21	ABC01064	1459	3e-25	1379 - 1438	100	60 / 60	plus	ABC01064
Harvest35	U35_13738	1459	3e-25	1379 - 1438	100	60 / 60	plus

Contig Sequence (1459 bp)

>U35_13738 1459 Hv_44K_v2
CAGAACGAGATCCTTCAGAGAATTATGGTTAGACAAGCTGAAGAGAAAAGATTGCATGGT
GCTATATGTGCTGCACCAGCTGTTGTTCTCATGCCCTGGGGTCTTCACAAGGGAAGAAAG
ATCACCTGTCACCCGTCCTTCATAGGAGATCTTTCAACATTCCGAGCTGTTGAGTCAAAT
GTTCAAGTTTCAGGAGAGCTCACTACTAGTCGTGGTCCTGGGACAGCATTTCAGTTTGCT
TTATCATTTGTCGAGCAATTGTTTGGGCCTCATGCTGTTGAAGATGTGGACAGTACTTTG
ATTGATGCTGGTCTTGAAAGAAGTACAGAAGTCAACAGAGTTGAGTGGCCTTTTGATCAC
AAACCTCAGGTTCTCATTCCAATTGCAAATGGGTCTGAGGAGATGGAGATCATAATGCTG
GTGGATATTTTAAGACGGGCAAACCTGAATGTGGTGTTGGCATCAGTTGACGAGTCCACA
AATATTGTTGGGTCTCAAAGATTGAACATTGTTGCTGATAAATGCATATTGGGTGCTTCT
GATTCCAAATATGATATAATCATTATTCCTGGGGGACCTGCCGGAGCTGAGCGTCTTCAC
AGGTCTACAACTCTTCAGAGGCTACTCAAGGAACAGAAGCAAGAAAGCAGGATGTATGGT
GGGATCGGTTATTCTCCACTGATATTGCAGAAGCAAGGTTTACTCCAGGATAAAACGGCG
ACAGCTCATCCTTCCATAGTCAATCAGCTCACTTGCCAGGTCATTGACCGATCAAAGGTT
GTGATTGATGGAAATTTGATTACTGGGAAGGGACTCGGAACAACCATGGATTTTTCCCTG
GCCATTGTAAGAAAATTCTTTGGCCATGGGCGAGCAAAAGGTGTTGCAAATGGAATGGTT
TTTGACTACACCAAGAGCAGTCACTGTTAGCTATGCTCAAAATTTGAGGTGACTGCCAAT
GTCCACTAAATATGTTGGGATGAACCACAACTGCATTGGGAAAATTCAGTTGGGGTCAGT
TCATCTCGAGATGTTCTGCGCCGATGCGGCATCATGGGCCGCGCGCTCCATGTGCGAGGG
TGCGCCGGACCTCCCCGGCGGGCGGCTCCAAGTATGGCAGCAGCGTCGTGCGTGAGTTGG
CGCTGGACCCGTTGCGGGACAACACTAGACAACATATAGGCACTATGTTGACAGGTTTGT
TTTCAACTTCTGGGCAATCTGCTTCCGTACGCTTTCCTGAATATCGAAGTGCATGACCTG
CAAACATGACGATACAGCAAGCAAATTATAATTTTGCTTCGTGACTGGACGAGCTTATGT
TATGTTTGCTGTCAGAATTTTGAAATGCCAATACTGAACACTGCCAAAAATTGTACTCCC
TCTGTAAGCTTTTATAAGACAGTCGATGAAAAAAGAAGGGTGAAAAAACACATTTGGTAA
TGCAAAAAAAAAAAAAAAA

Homology of Contig U35_13738 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g44330.5	455	2e-159	protein\|DJ-1 family protein, putative, expressed
Brachypodium v1_2	Bradi3g38210.1	452	3e-160
Arabidopsis v10	AT4G34020.1	472	2e-89	Class I glutamine amidotransferase-like superfamily protein \| chr4:16298553-16300897 REVERSE LENGTH=472