barSeed - Barley Seed Development Database

Probe CUST_5213_PI390587928

Source Contig U35_13739

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5213_PI390587928	Hv_44K_v2	CTAGTCTCCGATCTGTCGTTTCAATGTTATTTTGGTCTGTATGTAAGTAGCCCGGTTGCC	861	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359964	1539	2e-24	1389 - 1448	100	60 / 60	plus	ABC00262 ABC00398
MLOC	AK365675	1123	2e-24	807 - 866	100	60 / 60	plus	ABC00262 ABC00398
MLOC	MLOC_73838.1	950	2e-24	811 - 870	100	60 / 60	plus	ABC00262 ABC00398
JLOC1	JLOC1_49174.1	799	8e-25	480 - 539	100	60 / 60	plus
Harvest21	ABC00262	1029	3e-25	820 - 879	100	60 / 60	plus	ABC00262
Harvest35	U35_13739	1082	3e-25	862 - 921	100	60 / 60	plus

Contig Sequence (1082 bp)

>U35_13739 1082 Hv_44K_v2
AAAAGGTCACACATCTTTGACATCCCCACGACCGCACTTTATCAGCCGCAGCAGACAGAT
CTTCCTCGACACCCACCGGCGGCTAAGCGGATATGGCGGCTTCACCGGCAACATCGTCCG
CGCCCGCGGGGGCCTCCTCCTTCGCGCGGCTATCCAGCGCGCCTCTGCGTGCGCCCAGAG
CCGCCGCCGCCTCGTTCCCGTCGCCCAACTCCGCTCGTCCGGCCGCGCTGGTCGCGGATG
CTCGGGCCTCTCGGCTCCCCGTCGTGGCCGCAGCCGCCGCAGGGCACCAGCGGCTGATGG
GGTCGCTGACCAACAACGAGGGGCTCAGGTTCGGCGTGGTTGTGGCACGGTTCAATGAGA
TAGTGACCAACTTGCTTCTGCAGGGGGCTCTAGAGGCATTCGAGCGATACTCGGTCAAAG
CAGAAAATATCACCGTTGTTAGTGTTCCTGGCAGCTTTGAAATTCCTGTTGCAGCACAGA
AGCTTGGGAAGTCTGGAAAGTATGATGCAATTTTGTGCATTGGGGCTGTGATTAGAGGTG
ACACAACTCACTATGATGCTGTTGCAAACTCTGCTGCTTCAGGTGTACTCAATGCTGGAT
TGTCTGCCGGTATTCCCTGCGTATTTGGTGTTCTGACCTGTGATGACATGGACCAGGCGC
TAAATCGCGCTGGTGGGAAGGCTGGAAACAAGGGTGCCGAAACCGCTATAACTGCCATTG
AGATGGCCTCGCTGTTTCGGCATCACTTAGCCTGATGGCACCAAATGCTATTGTCGAGCC
AGCAAGACTTTCTCCCCTGTCCGTGGCAATCGGAGTTTTCTTTTTCCACAGTTGTTTCAA
ATTTCTTTGTATTACTGCAGGCTAGTCTCCGATCTGTCGTTTCAATGTTATTTTGGTCTG
TATGTAAGTAGCCCGGTTGCCGGTCCACCTTTGCCCGCAAGAAACTTGCAAGCCTAGAGC
ATGAATAAACTTTTTTTTGACACAGAATAAATCTTTTTCTAGATGCACGAATAAAAAAAA
AAAAAACTTTTTCGCCGTTGCATCGCTAAGTATGCTATTTCTCCGAAAAAAAAAAAAAAA
AA

Homology of Contig U35_13739 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42000.1	222	7e-84	protein\|6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g10780.1	221	2e-87
Arabidopsis v10	AT2G44050.1	227	5e-65	\| Symbols: COS1 \| 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase \| chr2:18224304-18225917 FORWARD LENGTH=227