barSeed - Barley Seed Development Database

Probe CUST_520_PI415269222

Source Contig TA41958_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_520_PI415269222	Hv_44K_v2	TCTTCTTGTGTCAGGACAAAGTTGCGATGCTAATTTCTTCGAATGGATTGATCATCCATC	1604	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.463	1.553	1.129	0.804	0.312	0.321
Raw	1290.487	2136.098	1357.587	1544.314	207.180	231.840

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC08612	1680	3e-25	18 - 77	100	60 / 60	minus	ABC08612
Harvest35	U35_3975	1680	3e-25	1604 - 1663	100	60 / 60	plus

Contig Sequence (1664 bp)

>TA41958_4513 1664 Hv_44K_v2
GCTATATTTGGCGATCGCCAATCTGCTGGAACTAGCACCTGTGGCGATACACAGCCTACA
CCATCTTTTCCCAGACTAGATGGAACTGATTTTAAATTTGGTTTTCGGTTTGATGATTTG
GAATATGTTCGTCAAGAGGATGATAGAAGGACCCTCGAGGAACTTTATGCATTTCCGACT
CTTCTTCCTTGTGTAACTGAAAATGCCCCGTTGTCGGAGATTTTACCTTTGCAGAAAGAT
AGTACACTTGCATCACGAGTTCTGAAGTTTATTCAGAGCATGAGTTTGAAAGACCCTCTT
CATCCAGTGGGTATTATCCAAGAATGCCTTTCTAAATGTATAAAGAAACAGGTGGATCAC
ATTGGCAAGCAAATCCTGTGCAAGCTAATGGGTGAATGGAGATTAATGGATGAACTGCTT
GTATTACGAGCTATCTATTTGCTAGGATCAGGTGACATGCTGCAGCAGTTTCTGATAACA
ATTTTTGATAAGCTCGATAAAGGAGATTCCTGGGACGATGATTTTGAGCTGAATACTTTG
TTGCAGGAATCCATAAGATATTCAGCTGATAAAATGCTCCTAACCGCTCCAGATTCGTTG
GTTGTTTCATTAGCAAAGCATGACACACGATATGATGAGGAAAGTGCACCAACTTCCAGA
AAAGGTCGTGCACAGGGTTTTGGCATCGATGCGCTTGATGTACTTAACTTCACATATAAG
GTGTCTTGGCCTCTTGATCTAATTGCCAATACAGAGGCTCTGAAGAAGTATAATAAGGTC
ATGGGGTTCTTACTGAAAGTCAAGCGTGCAAAGTTTGTTTTGGACGAAACCCGAAAGTGG
ATGTGGAAGGGCAGAGGCAGCACGACGCCTAATTTTAAACAACACTTAATAGTAGGGCAG
AAGCTCCTCCATTTTGTCGATGCATTTCATCAATATGTCATGGACCGAGTGTATCATAGT
GCGTGGACTGAGCTTTGTGATGGCATGGCATCTGCTACTACATTAGATGAAGTCATGGAA
GTTCATGAGGCATATCTTTCTTCTATTCAGAGACAATGCTTTGTGGCCTCGGATAAGTTG
TGGGCTCTGATCGCCAGTCGAGTCAAGACTATACTGGGATTGGCGTTAGACTTCCACAAT
GTGGAGCAAACTCTCGGCACCGGAGGGACCGCGGCATCTGTTAGGGCAAGATGCGAGATG
GAGTTGGATCGGATCGAGAAGCAATTTGACGAGTGCGTCGTGTTCCTCTTGAGGATCCTA
TCTTTCAAGCTGAACGTGGGCCACTTTCCCCATCTCGCGGATTTGGTCACGAGGATCAAC
TACAATCACTATTACATGTCTGACACCGGAAGCTTCACTGCGATCCCTGGGTCCCGTGCT
CGGCAGCAGCCTTGATAGGATTGTAGGTGCTTTTCAGCTCCATTTGTGGGGAGTGTATAT
AAACCTGACGTGGCCAGGCCGAGGTAGCACGAAGCAGTTCCTGAATTCCTTGGGTTTTAG
TACCACACAATTCTGAGGATGTATCTTCTTTTGACCGCATTCTGAGGATGCAACTTCCTT
TTCCCAAGTTTCAGTGTATGTGTGAGTATGTTGAAGAGATTGGGTCTTCTTGTGTCAGGA
CAAAGTTGCGATGCTAATTTCTTCGAATGGATTGATCATCCATC

Homology of Contig TA41958_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41290.1	1056	0.0	protein\|Spc97 / Spc98 family protein, putative, expressed
Brachypodium v1_2	Bradi4g02710.1	1036	0.0
Arabidopsis v10	AT1G80260.1	995	2e-180	\| Symbols: emb1427 \| Spc97 / Spc98 family of spindle pole body (SBP) component \| chr1:30175924-30180511 FORWARD LENGTH=995