barSeed - Barley Seed Development Database

Probe CUST_5205_PI390587928

Source Contig U35_25719

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5205_PI390587928	Hv_44K_v2	TTTGCGGCAGTAAGTTTCCCCGAGTCTGAATATATAGATGAGCGCAGGTTGACCAAAAAA	895	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.500	4.694	1.383	0.867	0.752	0.647
Raw	51.558	69.604	18.364	17.973	3.737	3.029

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_11056.3	1577	2e-21	1493 - 1546	100	54 / 54	plus
JLOC1	JLOC1_11056.2	1475	2e-21	1391 - 1444	100	54 / 54	plus
JLOC1	JLOC1_11056.1	1395	2e-21	1311 - 1364	100	54 / 54	plus
Harvest21	ABC22738	966	3e-25	896 - 955	100	60 / 60	plus	ABC22738
Harvest35	U35_25719	966	3e-25	896 - 955	100	60 / 60	plus

Contig Sequence (966 bp)

>U35_25719 966 Hv_44K_v2
ACTCCATCATTGATGATATTATTCTACCTGCCTTGTTTTATAACTCGCCATGTAGATATA
TCAGCTTTCCTTGTGCATCTTTTGGTTCGTGAACTAATTTTTGGAACCTTCTAGTTTTAT
GACTCCTGCATTTGTCAGCTGCTTTCTTTCTTCTACTTGTTTTATGCCCAATAATAGCTG
CAGGATTACACTTGCATATGGGAGTTGATAAGCGTATGCACCACAAATTCTATGATACAC
CGTGTCAGTTACATGTACATGCTCATTTTTGTGGTACAGATTTAGCATTACAACGACACA
GCCATCAAGCTGGGTGTTACATGTACATGCCTGGCTACCTGCTGTCGTTTCTTACTGCTC
AACTCAAGTAATTTGCAGGTGCTTTTATTACTCCATTCTCACAGACCATGCTTGGTACTA
CAGGCCCTGCTAAAAACATTGAGACTTCATCCGTGATTAATGCAGGCAATCCAACTTGCA
CGGGTCTGCCTAATTATCTTTGTTGGTACCCACCAGTTGCAAATTCAGGTATTCAAGTGT
CACGGCCTGCTGAAACCTCTGGGTTCACGTCTGCCACAAATGCAGGAGTTGCGGACTGAA
ACTGAAGCTGGATCTTGCAGCGCAAACTGATGTGGCCTAATTGAGTGGGCCTTACTCGAT
GTGCTCCTTCAAGTTGCTTGGTTGCAATGGTGTTGGAAGGACACTATTTAGTTGGTTGTG
TTTCCATTCGAGATATGTTCTATCAACTTGAGACTTTACCTACTCTTGGTAGTGTCATGT
TAGCATCAATCATGCGACATTGGACTCTTTGTTAGTGCTTGGTGGCATGTGGCATGTAAG
TTGTATAGTGAATCAGACCTAAAACTCCATCATGGTAAGTTGCAACATATGGGTTTTTGC
GGCAGTAAGTTTCCCCGAGTCTGAATATATAGATGAGCGCAGGTTGACCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_25719 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None