barSeed - Barley Seed Development Database

Probe CUST_5202_PI390587928

Source Contig U35_13742

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5202_PI390587928	Hv_44K_v2	TTCTGGATACTTGATCGACTATTGCTGAGATGCTATGCGAGCTAAAATTTTGGTAAAAAA	623	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.611	1.251	1.060	0.852	0.460	0.467
Raw	51149.333	59973.567	46318.000	57272.300	11060.910	12250.523

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_13742	730	3e-25	624 - 683	100	60 / 60	plus

Contig Sequence (730 bp)

>U35_13742 730 Hv_44K_v2
CAAACCCCTACCGCCGCCCCCGCCGCCTCCACTGCCGTCGCCGCCACAGCGCGCGGAGGC
GACCGCCCCACCGCCGCCAAGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATC
ACGCTGGAGGTGGAGTCCTCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAG
GAGGGCATCCCGCCGGACCAGCAACGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGC
CGTACTCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTT
CGTGGTGGTGCCAAGAAGCGCAAGAAGAAGACGTACACCAAGCCCAAGAAGCAAAAGCAC
AAGCACAAGAAGGTGAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGACGATTCCACCGGC
AAGGTAACCCGGCTCAGGAAGGAGTGCCCCAACGCCGACTGCGGTGCCGGGACCTTCATG
GCCAACCACTTCGACCGTCACTACTGCGGCAAGTGCGGCCTCACCTACGTCTACAACCAG
AAGGCCTAGAGGTGGCTTGCGTTTGCTCTGCTCTTTTACCCTGTCGTTTGTCATTGAAAA
CTGAAACCTTGGAGTAATATGTTTTCTGGATACTTGATCGACTATTGCTGAGATGCTATG
CGAGCTAAAATTTTGGTAAAAAAAAAAAAAAATTCTTTTTCATGGTCGCTATCAAAAAAA
AAAAAAAAAA

Homology of Contig U35_13742 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g06770.1	156	9e-80	protein\|40S ribosomal protein S27a, putative, expressed
Brachypodium v1_2	Bradi2g12280.1	156	2e-81
Arabidopsis v10	AT2G47110.1	157	2e-72	\| Symbols: UBQ6 \| ubiquitin 6 \| chr2:19344701-19345174 FORWARD LENGTH=157