barSeed - Barley Seed Development Database

Probe CUST_51_PI415269222

Source Contig TA33363_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_51_PI415269222	Hv_44K_v2	AAGCGATGTACATTGCTGTTATGTGAAGGTGCCAAGTGCCAAAATTGTTGTGATTCTCCT	1388	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.664	1.376	1.216	0.797	0.208	0.335
Raw	244.609	317.300	246.261	264.910	24.258	40.543

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_13744.2	1609	8e-25	1521 - 1580	100	60 / 60	plus
JLOC1	JLOC1_13744.1	1007	8e-25	919 - 978	100	60 / 60	plus
Harvest35	U35_472	1492	3e-25	1413 - 1472	100	60 / 60	plus

Contig Sequence (1451 bp)

>TA33363_4513 1451 Hv_44K_v2
AACCACAGGCAAAATCCCCCGCACCATCGCCCCCTTCCATTCTTTGACCCCCTCTCTCTC
TCTGTCCGTGCGCGCGCTCTGTTCTTGGGGTGGGAGGAAATGGCGGCACGGCGCGAGCTG
GTGGTCAGCTTCGGGGAGATGCTGATAGACTTCGTGCCGACGGTGGCGGGGGTGTCGCTG
GCGGAGGCCCCGGCCTTCGTCAAGGCGCCGGGGGGCGCCCCCGCCAACGTCGCCATCGCC
GTCGCGCGCCTCGGCGGCGGGGCCGCCTTCGTCGGCAAGCTCGGCGACGACGAGTTCGGC
CGCATGCTCGCCGCCATCCTCCGCGACAACGGCGTCGACGCCGGCGGCGTCGTCTTCGAC
TCGGGCGCGCGCACCGCGCTCGCCTTCGTCACGCTGCGCGCCGACGGGGAGCGCGAGTTC
ATGTTCTACCGCAACCCCAGCGCCGACATGCTCCTCACCGCCGACGAGCTCAACGTCGAC
GTCATCAAGAGGGCTGCAGTCTTCCACTATGGATCAATAAGCTTGATTGCCGAGCCTTGC
CGGACAGCACATCTGCGTGCCATGAAGGTTGCCAAAGAGGCCGGCGCGCTTCTCTCATAT
GACCCGAACCTGAGGGAGGCATTGTGGCCATCCCTTGAGGAGGCTCGCACCAAGATCTTG
AGCATCTGGGACCAGGCAGACATTGTCAAGGTCAGCGAGGTCGAGCTCGAGTTTTTGACT
GGCATCAACTCGGTGGAGGACGATGTTGCCATGAAGCTGTGGCGCCCTACCTTTAAGCTC
ATGCTTATCACTCTTGGAGATCAAGGATGCAAGTACTATACCAAGGATTTCCGTGGAGCT
GTTCCATCCTACAAGGTACAGCAAGTTGATACGACAGGTGCTGGTGATGCATTTATTGGT
TCCCTGCTCCGAAAAATTGTCCAAGATCCATCGGCATTGCAAGACAAGAAAAAGCTTGAG
GCGGTGATCAAATTTGCCAACGCATGTGGAGCAATCACCGCCACGAAGAAAGGGGCAATC
CCTTCATTGCCCAAGGAAGAGGAGGTGTTGCGGCTGATGGAGAAGGCGTAGATGCGGCTT
ATGATTTCCAGTAGCTTCGTATTCTGCAAATTGTATTGTACGCTGTTCTGGATCAGGAGC
AAGGTGTATTCCTCCCAGGATACCCCTGCTTGCCTTTTTGTTTTGCCCTATTTCCCTTTA
CTAAGGGTTTTTTGTTTGTGATTGCAATTCTTATCTGAATAAGCAGATCCTTCAATATCA
CCGTGTCATTCCTGTATTACCGGCCATTTTTTGGTATTTTCTTTTTTCCATGTTGTGTGA
CCTTAGTGTGATTCCCGAATTTGCGGTGTAGCCCCTGAGGTGGTTTATGTTCTCAATTTT
TGACAAGGAAGCGATGTACATTGCTGTTATGTGAAGGTGCCAAGTGCCAAAATTGTTGTG
ATTCTCCTGGC

Homology of Contig TA33363_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66940.1	324	0.0	protein\|kinase, pfkB family, putative, expressed
Brachypodium v1_2	Bradi2g57500.1	324	0.0
Arabidopsis v10	AT2G31390.1	325	2e-166	pfkB-like carbohydrate kinase family protein \| chr2:13383635-13386116 REVERSE LENGTH=325