barSeed - Barley Seed Development Database

Probe CUST_519_PI415269222

Source Contig TA37488_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_519_PI415269222	Hv_44K_v2	TCTCTGAGAACTCTGCTGTGTGTACAGAAATGCAAACAGCCTTGATATTGTTTGTCATCT	1271	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.041	1.966	1.048	0.875	0.411	0.527
Raw	1321.300	1998.326	925.540	1227.124	201.268	280.285

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16711.1	1631	2e-24	1476 - 1535	100	60 / 60	plus	ABC08023
JLOC1	JLOC1_11531.1	1643	8e-25	1476 - 1535	100	60 / 60	plus
Harvest21	ABC08023	1366	1e-23	1294 - 1350	100	57 / 57	plus	ABC08023
Harvest35	U35_3135	1366	1e-24	1294 - 1352	100	59 / 59	plus

Contig Sequence (1331 bp)

>TA37488_4513 1331 Hv_44K_v2
CGGCACGAGGGTCCCGTTCGCGCACGCTACTCGATTGATTGCTTCCTTCCGCCCGCTGCT
CCGCTGCCGCCACAGCTCCTCCCTCCTCCTCCTGCTCGAGTCCCCCGGTGCCCTAGCAAG
CCCGCTGCCACTGGCGGCGAGCGAGAGTCCGGATCGCGGGCGCCGCGCCGCTCCTTCCCC
TCCCCTACCGGAGGGAGACCCCGCCGAGGATCGAGGACCGGCCGGCCGCGGAATGGGCGG
CCGCGATGACTAGCGGGGGTCGCGCGGCGGCGTTGTTGGCGGAGGCAGCGGGGCGCATAC
CATGGTGCAGTGTCTCGACGGCGTCAAGCACCTCCTCGCGGTCCTCTTCAAGTGCTGCGA
CCTCGAGCTCAAGCAGCCCCGGGGGCTCGAGGACCCCCAGGTCCTCGCGCGGGAGACCGT
CTTCAGCGTGAGCGAGGTCGAGGCGCTGTACGAGCTCTTCAAGAAGATCAGCAGCGCCGT
CATCGATGACGGGCTGATTAACAAGGAGGAGTTCCAGTTGGCGCTCTTCAAGACGAGCAA
GAAGGAGAGCCTCTTCGCTGATCGTGTATTCGATTTGTTCGACACAAAGCACAATGGAAT
TTTAGGGTTTGAAGAGTTTGCTCGTGCACTCTCAGTGTTTCACCCAAATGCTTCAGTTGA
AGAGAAAATTGACTTTTCATTCCAGCTATATGATCTTAAGCAACAAGGCTTCATTGAGAG
ACAAGAGGTTAAGCAGATGGTTGTTGCCACACTTGCGGAGTCAGGAATGAATCTGTCTGA
TGAAATTATAGAGAACATAATTGATAAGACGTTTGAGGAGGCAGACACAAAGCATGATGG
AAAAATTGACAGGGAAGAGTGGCACAATCTGGTTCTTCGACATCCTTCTTTACTGAAGAA
CATGACTCTTCAGTATCTCAAGGACATCACCACGACATTTCCAAGCTTCGTCTTTCATTC
TCAGGTCGACGATACCTGAAATTCTTGCAGTTCTTTCGAATCGGAACATAAGAAGATAAG
CTTGCAGTAATTTTGTAAGGTTTTGGCATCGGACTGTTTGGAACATTGGATCGGATGAGA
GATAGAGGCATTGCTGCTCTGAAGGATGTTGAATTTGAGAACGCAAATTGTTGTTAAATA
ACTTTGCTTCTTCCATTTGAAGAATTTAGAACTGTTGGGAGCCTTCGGGCAAGGTGTTAT
CTCTTATCTGAAATTCCCATTTTCTCCTCTCCCCGTTTTTGTTTTTTGGCTGGTTAGCGA
TCAGGTCCAATTCTCTGAGAACTCTGCTGTGTGTACAGAAATGCAAACAGCCTTGATATT
GTTTGTCATCT

Homology of Contig TA37488_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g40510.1	226	3e-148	protein\|calcineurin B, putative, expressed
Brachypodium v1_2	Bradi4g02740.1	226	3e-149
Arabidopsis v10	AT4G26570.2	230	9e-134	\| Symbols: ATCBL3, CBL3 \| calcineurin B-like 3 \| chr4:13408608-13409998 REVERSE LENGTH=230