barSeed - Barley Seed Development Database

Probe CUST_5197_PI390587928

Source Contig U35_13747

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5197_PI390587928	Hv_44K_v2	TTTAAGATGTACTGGAAGGCTGGAAGGCTAAGTTATGCAGTAGTATTTGTAAAAGCTCAT	1515	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.583	1.596	1.110	0.935	0.411	0.363
Raw	668.412	1046.434	644.597	851.072	130.459	125.967

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_40454.2	1062	8e-25	907 - 966	100	60 / 60	plus
JLOC1	JLOC1_40454.1	1045	8e-25	890 - 949	100	60 / 60	plus
Harvest21	ABC04743	1259	3e-25	1172 - 1231	100	60 / 60	plus	ABC04743
Harvest35	U35_13747	1575	3e-25	1516 - 1575	100	60 / 60	plus

Contig Sequence (1575 bp)

>U35_13747 1575 Hv_44K_v2
CAGCTCCACCCCGCGGTCCCCTCTGCCGCTGCACCGCTCCGCCCCGCCCGCCTGCTACTG
CTACTGCTACCTGCACCCGCACCCACACCCATCCCTCCTCCTCCACTTGACCCGGTGCCG
GTGGTACCACCTCCTCCCAAGGCAGCAGCGGATACATACGAAGCGGGAGCTATAGCCCGC
GCGCGCAGGCCTGTTCGGCCATGGCGTACCAGTACCACCACCACCAGGACCACGCGCTGG
GGATGGACGCGGCGGCGGCGGCGGCGGCGGGGGGAACCCTGGCGGCGGCGGCTTCGCGCC
GGGCTTAAGCGCGGGCGGCGCGTGGGAGGGGGAGAAGGCGGCCGTCGAGGCGCACCCGCT
GTACGAGCGGCTCCTGGAGGCCCACGTCGCCTGCCTCCGCGTCGCCACCCCCGTCGACCA
GCTCCCCCGCATCGACGCGCAGATCGCGGCCCGCCCGCCCCCGCTCGCCGCCGCCGCCGC
CGCCGCGGGCGGGCCCTCCGGAGGCGAGGAGCTCGACCTCTTCATGACACATTATGTATT
GCTTCTCTGTTCATTTAAAGAACAGCTCCAGCAGCATGTACGTGTTCACGCAATGGAAGC
GGTGATGGGCTGCTGGGAGCTTGAACAATCCTTACAGAGTCTAACAGGGGCATCTCCTGG
CGAAGGCACTGGAGCGACTATGTCTGATGATGAGGATAACCAAGTGGATAGTGAGACCAA
CATGTTTGATGGAAATGATGGGTCAGATGGTATGGGCTTTGGTCCCCTGATATTGACCGA
GGGTGAACGGTCGTTGATTGAACGTGTTCGACATGAGCTGAAGAGCGAGCTTAAACAGGG
GTACAAAGAAAAGCTGGTTGATATCAGGGAGGAGATCATGCGAAAGAGGAGAGCTGGTAA
ACTTCCTGGGGATACTGCAGCTACATTGAAAGCCTGGTGGCAAGCTCATTCCAAGTGGCC
GTACCCTACTGAAGACGACAAGGCTCGCCTGGTGCAGGAGACAGGGTTACAACTGAAGCA
GATCAATAATTGGTTCATCAACCAACGCAAACGGAACTGGCACAGCAGCAACACAGCTTC
CTCTAGTGAAAAAACCAAGAAGAAAAGAAACGTTACAGGTAATGACGGCGCGGAGCAATC
GTGGTAGACTGGGTCCCAGATGAAACAAACTAGATGTAAACAATACAACCTTTATCATGA
AGAGTGCTGCAGTATATCCTCTACCCCTCTCTCCTCTTTCTCTCTGGTGGGGCAACTAGA
TACGAAGACGACCCGTTCATTGGCGAAGAAGTCATCAGTAATAGTTGACTAAAAGTGGTA
GTGGCTCTGGACGTGCAGTGTGAGTGTTTTGCTAATGTAATTTGTGTAAGCCCGTGTTGT
ATAACCGAGGAACGGAAGGGAGCATTGCATTGGTGTATGTACTTGTATATTCGATTCATC
ATGTAACAATTATGTTAGAGAAACACGGATTGGGTGTTTTGTGGGTGTGCCATGGTCTGA
AACGAAACCGTTCTGTTTAAGATGTACTGGAAGGCTGGAAGGCTAAGTTATGCAGTAGTA
TTTGTAAAAGCTCAT

Homology of Contig U35_13747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g08544.1	314	2e-165	protein\|homeobox protein knotted-1, putative, expressed
Brachypodium v1_2	Bradi3g06170.3	317	1e-174
Arabidopsis v10	AT5G25220.1	431	2e-132	\| Symbols: KNAT3 \| KNOTTED1-like homeobox gene 3 \| chr5:8736208-8738115 FORWARD LENGTH=431