barSeed - Barley Seed Development Database

Probe CUST_5194_PI390587928

Source Contig U35_25720

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5194_PI390587928	Hv_44K_v2	ATTGTACCGGAGATTCGCTGGTTAAGTATGTTTAACATGAAGTGGCTGCTTTTCTGTATC	349	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362496	2342	2e-24	2281 - 2340	100	60 / 60	plus	ABC25991
Harvest21	ABC25991	430	3e-25	350 - 409	100	60 / 60	plus	ABC25991
Harvest35	U35_25720	430	3e-25	350 - 409	100	60 / 60	plus

Contig Sequence (430 bp)

>U35_25720 430 Hv_44K_v2
CGTCTCCCTGTTAATCTTAAACACCCGGAAGACCTGGAGCCTCTCGCACATATATGTTTA
TATATCTATCTGTAGTGTTTTAAGTCTGCACAGGAAGAAGTCTTGTAGGAAGTTGCTGCT
TAGTTATGTCTCTGCTTGTGTGGTGGGAAGCAAGTGAGCGATGGTGCTGTGTTATCACGG
TAGTTTTGGTCAGAGCACAGGGCAATTCTGTAAGATATGCTACGCTGAAAGAATTGACAG
GCGGTGTCGGTGTAGGTTAGCTGCTTAAACTATGTTCATCAGGGGGATGTTTATGGTACC
GGAAATTTGCTGGTTAGTTGCTTGTAGCTCATTATCAGGGGTGATATTTATTGTACCGGA
GATTCGCTGGTTAAGTATGTTTAACATGAAGTGGCTGCTTTTCTGTATCGCANAAAAAAA
AAAAAAAAAA

Homology of Contig U35_25720 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None