- Probe CUST_5187_PI390587928
- Source Contig U35_25727
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5187_PI390587928 | Hv_44K_v2 | CTATGCCGGAGCTGTAGCTTATGCTGAATTTACTTGTAAACACTGAAATATTTAATGCAA | 304 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.210 | 3.396 | 1.251 | 0.580 | 0.162 | 0.183 |
| Raw | 6591.907 | 5706.777 | 1831.037 | 1389.771 | 132.392 | 163.217 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61818.2 | 1825 | 2e-24 | 21 - 80 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_40420.2 | 2366 | 8e-25 | 1736 - 1795 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40420.1 | 2160 | 8e-25 | 1736 - 1795 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00352 | 732 | 3e-25 | 662 - 721 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25727 | 394 | 3e-25 | 305 - 364 | 100 | 60 / 60 | plus |
Contig Sequence (394 bp)
>U35_25727 394 Hv_44K_v2 TCATGGAGTTCTCAGATGACGCGGAAGAGACTTTCTCAAGAGCAATTACCAGCCTGCTGG ATGCGAAATACATGAATGAAGGGGACTATGTCACCCTGGTTCAGAGTGGGTCGCAGTCGA TCTGGAGAGACGAGTCTACCCACCACATACAAGTGAGGAAAGTTCAGTGCTGATGCAGAA CATGCTGGTCTCCCCCCCTTATCACGAATTCACGAGAGAAAAGTTTTGATGGCGCCACCA AGTGTGTTATTCTACTGTGTCGTGTTATGACTACACCCGAGTAATTTTTTTATCGACAAC ATTGCTATGCCGGAGCTGTAGCTTATGCTGAATTTACTTGTAAACACTGAAATATTTAAT GCAATATTCATTCTTCTAAAAAAAAAAAAAAAAG
Homology of Contig U35_25727 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |