barSeed - Barley Seed Development Database

Probe CUST_5179_PI390587928

Source Contig U35_13751

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5179_PI390587928	Hv_44K_v2	TTTTGTTCAGTAGCAGTCGTATCCGGAGCAATGTTACTACCTGTTCTCCCATTAGCCCAT	480	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.018	1.963	1.496	1.491	0.656	0.591
Raw	2474.940	7901.077	4940.013	8026.870	1183.810	1177.960

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16997.1	878	2e-24	603 - 662	100	60 / 60	minus	ABC00234
JLOC1	JLOC1_11740.1	878	8e-25	603 - 662	100	60 / 60	minus
Harvest35	U35_13751	565	3e-25	481 - 540	100	60 / 60	plus

Contig Sequence (565 bp)

>U35_13751 565 Hv_44K_v2
GTCCCAGTTCCACACCCGCTCGCAGCTGGAACCAGGGAGAGATCGTCAGCCATGTCCGGG
CGCGGCAAGGGAGGCAAGGGTCTGGGCAAGGGCGGCGCCAAGCGCCACCGGAAGGTGCTG
CGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGTCGCCTGGCGAGGAGGGGCGGC
GTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTCCTC
GAGAACGTCATACGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACC
GCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGACGCACCCTCTACGGATTCGGCGGC
TAGGCCTAGGCGTCCATCTGCGCCCGCAGCCCGTCGCCTCCTCGCCGTCCGCAGTCCGCA
CCGCCGTCGGCCAACAACTCTGCCCCGCCGTGGCCGCAGGCGCGAAGAAACAGCCATGTC
TTTTGTTCAGTAGCAGTCGTATCCGGAGCAATGTTACTACCTGTTCTCCCATTAGCCCAT
CGCAGAATTCCTCTAGTGAGCATGT

Homology of Contig U35_13751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g19360.1	104	6e-51
Arabidopsis v10	AT5G59970.1	103	7e-51	Histone superfamily protein \| chr5:24146352-24146663 REVERSE LENGTH=103