barSeed - Barley Seed Development Database

Probe CUST_5176_PI390587928

Source Contig U35_13754

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5176_PI390587928	Hv_44K_v2	GGAGAAATAACCCCTCTGTGTTATTATATGTATTAATACCCCACTTTATATGTGTTCTCC	590	GeneList: royalblue MasterList: Wall_associated_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.989	5.505	1.027	0.715	0.432	0.624
Raw	128.981	166.581	25.925	29.410	4.847	8.963

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_26655.1	778	8e-25	457 - 516	100	60 / 60	plus
Harvest21	ABC49098	516	3e-25	392 - 451	100	60 / 60	plus	ABC49098
Harvest21	ABC01054	681	3e-25	555 - 614	100	60 / 60	plus
Harvest21	ABC01026	1094	3e-25	951 - 1010	100	60 / 60	plus
Harvest35	U35_13806	680	3e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_13754	710	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_13754 710 Hv_44K_v2
CACGGTGGAGGAGGAGGCGGCGGCTACCCGGGCCACGGTGGAGGCGGCGGCGGCGGCTAC
CCAGGACACGGTGGAGGAGGCGGGGGCGGCTACCCGGGCCACGGTGGAGGAGGCGGCGGC
GGCTACCCCGGCCACGGTGGAGGAGGCGGCGGCGGCTACCCGGGCCACGGTGGAGGAGGC
GGCGGCTACCCAGGTCACGGTGGAGGAGGTGGCGGCGGCTACCCGGGACACGGTGGTAAA
GGCGGTGGCGGCTACCCCGGACACGGCGGAGGCGGCGGTGGTGGCTACCCCGGACACGGC
GGAGGCGGCAGTGGATGTCACTGGGGCTGCTGCGGTCACGGGTACAATGGCTGCCGCTGC
TGTGCGCGCGCGGACGAGGTCCCTGAGCCCATGTACCGCGCGGAGGTCCGCAACTGAGCG
CTCGAGATGCAGCCATACGTGCGTGCGTACAAGGTAGTACAACTCTACGTGACATTGCTC
TGCACAGATACACTTATAGTAAGTTGCAGAGTTGCTGGTAAATATGGTCTCTGGTAAATA
AAGTGTGTACGAGAGCCCGGTTTGCACTTAATTTGCACGGCGATGATCTTGGAGAAATAA
CCCCTCTGTGTTATTATATGTATTAATACCCCACTTTATATGTGTTCTCCAAGTATGTAT
TGTGGAATAAAATAACAGAGGAATATATCCAGAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13754 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None