barSeed - Barley Seed Development Database

Probe CUST_5175_PI390587928

Source Contig U35_13755

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5175_PI390587928	Hv_44K_v2	CAGTGGACTAGTAGCTGTTAATCATGTCGAATTAATAAAAGGTGAAGAAACTGGATATCA	1127	GeneList: lightgreen MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.106	0.121	0.245	3.818	17.696	33.540
Raw	6.993	12.430	24.566	576.288	946.282	1951.473

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69515.1	1411	2e-24	1336 - 1395	100	60 / 60	plus	ABC01854 ABC01868 ABC01876
JLOC1	JLOC1_46063.1	1384	8e-25	1256 - 1315	100	60 / 60	plus
Harvest21	ABC43446	384	3e-25	17 - 76	100	60 / 60	minus
Harvest21	ABC01868	1219	3e-25	1128 - 1187	100	60 / 60	plus	ABC01868
Harvest35	U35_13755	1219	3e-25	1128 - 1187	100	60 / 60	plus

Contig Sequence (1219 bp)

>U35_13755 1219 Hv_44K_v2
CCGGTCACACACAAAGGAGAGAGGAGATGGCTCGTGTTCCTCTGCTAGCAGCACTTGTGG
TGGCAATGGCGGTGTTGGTGGCCAGCTCGCTTGGACCTAGGGCTTCTGCGGCCGAGCCAC
CGGTGGCGCCCGGCCTGTCGTTCGACTTCTACTGGCAGACGTGCCCGCGGGCGGAGTCCA
TCGTGCGCGAGTTCGTCCAGGAGGCCGTGCGCAAGGACATCGGCCTCGCCGCGGGCCTCC
TTCGACTCCACTTCCACGACTGCTTCGTGCAGGGCTGCGACGCCTCCGTGCTGCTCGACG
GCTCGGCCACGGGGCCGGGGGAGCAGCAGGCGCCGCCCAACCTCACGCTCCGCCCCTCCG
CCTTCAAGGCCGTCAACGACATCCGGGACCGGCTGGAGCGCGAGTGCCGCGGCGCCGTCG
TCTCCTGCTCCGACATCCTGGCCCTCGCCGCCCGTGACTCCGTGGTCGTCTCTGGCGGGC
CTGACTACCGCGTGCCCCTCGGCCGCCGCGACAGCCGCAGCTTCGCTTCGACGCAGGACG
TCCTGTCCGACCTGCCGGGGCCCTCCTCGAACGTGCAGTCCCTCCTCGCCCTGCTCGGCC
GCCTCGGCCTCGACGCCACCGACCTCGTGACGATCTCCGGCGGCCACACCATCGGGCTGG
CGCACTGCAGCTCCTTCGAGGACAGACTCTTCCCGCGCCCCGACCCCACCATAAGCCCCA
CCTTCCTCTCGAGGCTGAAGAGGACGTGCCCGGCCAAGGGCACCGACCGCCGCACCGTGC
TGGACGTGCGCACACCCAACGTGTTCGACAACAAGTACTACATAGACCTGGTGAACCGGG
AGGGGCTCTTCGTCTCCGACCAGGACCTCTTCACCAACGCCATCACCCGGCCAATAGTCG
AGCGCTTTGCGCAGAGCCAGCAGGACTTCTTCGAGCAGTTCGGCGTGTCCATTGGTAAGA
TGGGGCAGATGAGGGTCCGCACCAGCGACCAGGGCGAGGTCCGCCGGAACTGCTCCGTCC
GCAACCCTGGCCCCGGCGCCGACGCGCTCCAGTTGCCGTCCCTTGTGCAGACCATTGTCG
ACGAAGCCGCAGGAAGCATTGGCTAGCTTCTACAGTAGCATCTAGATCAGTGGACTAGTA
GCTGTTAATCATGTCGAATTAATAAAAGGTGAAGAAACTGGATATCATTTTCAGCTGTCA
AAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13755 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73220.1	359	2e-158	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g33940.1	368	2e-172
Arabidopsis v10	AT1G71695.1	358	2e-119	Peroxidase superfamily protein \| chr1:26964359-26966557 FORWARD LENGTH=358