barSeed - Barley Seed Development Database

Probe CUST_5172_PI390587928

Source Contig U35_13758

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5172_PI390587928	Hv_44K_v2	CTTGTAGTAAAAGTCTGTCATGCACTGTACAAGATCTCTGGCTGTGGTACTAATAACTAT	599	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57967.1	685	2e-24	616 - 675	100	60 / 60	plus	ABC01220 ABC01242 ABC31937
JLOC1	JLOC1_37632.1	813	8e-25	626 - 685	100	60 / 60	plus
Harvest21	ABC01231	658	1e-24	600 - 658	100	59 / 59	plus
Harvest35	U35_13758	659	3e-25	600 - 659	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_13758 659 Hv_44K_v2
CCACCTCGGCCTCCTACCACTACCAGTAGCACTCTCCCAGTCCCAGTGTGACTTGCAAGC
TCGATCGCGCAATGGCGGCTCGCGGTGGGAAGGCCCTGGTCCTGGCCATGCTGATCTCCT
TCCTCGCGGTCCAAGGAACGCCGGTGTTTGATTTCGCCGCGTGCTACTGCCACCTCCACA
AGGGGTGCCTATTACACACGCCAGCTAGCAGTACCAAGGAGTTCCACTGCGTGATGACAA
GCCTCGCAACATGTACTGATCGGAGGTGCTCGAAGATCACTCCTTCCGTGATGCCACTGG
CCGATGCTGTCAACACCGACGAGGGTAGCATGGCCGTTCCTGCCGGGGGTGCCGATCACG
GCGAGTTCAACGTCGCTGAGCGCAGCATGGCTGCTCCTGCCGAGGGTGCCGATCACAGCC
AGTTCAACTTCGCTGAGGGCAACATGGCTGCTCCTGCCGGGGGTGCCCATCACGGCGAGT
CCAACACCGCTGAAGAGGATGCAGCTCCATGAGGGCCGCGAGAGGCTGGCTGGAGACTTG
GACGACAGACACAGTTTGGCCATGCTATAGGCCGAGAAACTCTNTAAAATAAAAGCGTTC
TTGTAGTAAAAGTCTGTCATGCACTGTACAAGATCTCTGGCTGTGGTACTAATAACTAT

Homology of Contig U35_13758 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None