barSeed - Barley Seed Development Database

Probe CUST_516_PI415269222

Source Contig TA29909_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_516_PI415269222	Hv_44K_v2	CGTGTCTTGTTAAGTTTTCGATCGATACATGTTTTGCGTCTGTAGATCTTATAATCAAAC	1782	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375145	2555	3e-22	2370 - 2428	98	59 / 60	plus	ABC02143 ABC02148 ABC45008 ABC49823
MLOC	MLOC_5287.1	2319	3e-22	145 - 203	98	59 / 60	minus	ABC02143 ABC02148 ABC49823
JLOC1	JLOC1_3395.1	2525	1e-22	2102 - 2160	98	59 / 60	plus
Harvest21	ABC39092	514	5e-23	142 - 200	98	59 / 60	minus
Harvest21	ABC02149	689	5e-23	123 - 181	98	59 / 60	minus
Harvest21	ABC02144	1964	5e-23	1768 - 1826	98	59 / 60	plus
Harvest21	ABC02143	269	5e-23	52 - 110	98	59 / 60	plus	ABC02143
Harvest35	U35_517	532	5e-23	338 - 396	98	59 / 60	plus
Harvest35	U35_397	1981	5e-23	1783 - 1841	98	59 / 60	plus

Contig Sequence (1883 bp)

>TA29909_4513 1883 Hv_44K_v2
ATACAACTCGTGGGCAGCAGCTTCTTCTCTGCATACCAAGAAGTCGCCTCCGTTGCTTTC
CTCCAGCAGTGCGCGCCCCTCCTCTCCTCTCGAGATCTTCTCCGAGTTGCTGAGATCTGG
TTGTAAGCAGCCAAGATGGTGAAGATCTGCTGCATCGGTGCTGGCTACGTCGGCGGCCCA
ACAATGGCTGTCATTGCCATCAAGTGCCCAGCAATTGAGGTGGTGGTCGTCGACATCTCC
AAGCCCCGCATTGACGCCTGGAACAGCGACACCCTCCCGATCTACGAGCCTGGCCTCGAT
GATGTTGTCAAGGCCTGCAGGGGCAAGAACCTCTTCTTCAGCACTGATGTTGAGAAGCAT
GTCGCCGAGGCCGACATCATCTTCGTCTCCGTCAACACCCCCACCAAGACCCGTGGTCTG
GGAGCCGGCAAGGCTGCCGACCTCACCTACTGGGAGAGCGCCGCCCGGATGATCGCCGAT
GTGTCCAAGTCGGACAAGATCGTCGTCGAGAAGTCCACCGTCCCCGTCAAGACCGCAGAG
GCCATTGAGAAGATCCTGACCCACAACAGCAAGGGCATCAACTACCAGATCCTGTCCAAC
CCGGAGTTCCTCGCCGAGGGCACTGCGATCGACGACCTGTTCAAGCCCGACAGAGTGCTC
ATCGGTGGCCGGGAGACCCCCGAGGGCAGGAAGGCCGTCGAGGCTCTCAAGTCGGTGTAC
GCCCACTGGGTGCCCGAGGAGAACATCATCACCACCAACCTGTGGTCTGCCGAGCTCTCC
AAGCTCGCCGCCAACGCCTTCCTGGCCCAGAGGATCTCGTCCGTGAACGCCATGTCGGCG
CTGTGCGAGGCCACGGGCGCCAACGTGTCGGAGGTGTCGTACGCCATCGGCAAGGACTCG
AGGATCGGTCCCAAGTTCCTGAACGCCAGCGTCGGGTTCGGCGGGTCGTGCTTCCAGAAG
GACATCCTGAACCTGGTGTACATCTGCGAGTGCAACGGCCTGCCGGAGGTGGCCAACTAC
TGGAAGCAGGTGATCAAGATCAACGACTACCAGAAGAGCCGGTTCGTGAACCGCGTGGTG
TCGTCCATGTTCAACACCGTGTCCGGCAAGAAGATCGCCGTGCTCGGGTTCGCCTTCAAG
AAGGATACCGGCGACACCCGGGAGACCCCGGCCATCGACGTGTGCAAGGGCCTGCTGGGC
GACAAGGCCCAGGTGAGCATCTACGACCCCCAGGTGACGGAGGACCAGATCCAGCGCGAC
CTGGCCATGAACAAGTTCGACTGGGACCACCCGATGCACCTGCAGCCGACGAGCCCCACG
GCCGTGAAGCAGGTGAGCGTGGTGTGGGACGCGTACGAGGCCACCAAGGGCGCCCACGCC
GTGTGCATCCTCACCGAGTGGAACGAGTTCAAGTCGCTGGACTACAAGAAGATCTTCGAC
AACATGCAGAAGCCGGCCTTCGTCTTCGACGGCCGCAACGTCGTCGACGCCGAGAAGCTC
AGGGAGATCGGCTTCATCGTCTACTCCATCGGCAAGCCGCTCGACGGGTGGCTCAAGGAC
ATGCCCGCCGTCGCCTAATTCGCTCTCCACGTCGGCCGGCCTCGTCTGTCTGCCGGCGGC
GTCGTCGATCGGGGCTGCAGGAAGGCAGGGGAAGGAAGGAAGGAAGGAAGGAAGATGAGC
CGGTGGTTTGAGTTTGACCATATCCATTCTTTATAGTTTGCGTTTTGCAGGAGAAGCATC
AACAACAGTTCCTCGCCCGGGCATAAAAATTTAGTAAACCTTCGTGTCTTGTTAAGTTTT
CGATCGATACATGTTTTGCGTCTGTAGATCTTATAATCAAACTNCCTCGNCCCCTGTGCT
GTCCGAGGAGGTTTTTTTCCCTT

Homology of Contig TA29909_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g25690.1	481	protein\|UDP-glucose 6-dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi1g08120.1	481
Arabidopsis v10	AT5G15490.1	480	UDP-glucose 6-dehydrogenase family protein \| chr5:5027872-5029314 REVERSE LENGTH=480