barSeed - Barley Seed Development Database

Probe CUST_5169_PI390587928

Source Contig U35_25732

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5169_PI390587928	Hv_44K_v2	CTGCCAGATGTCATGAACTTTGTGATCATTGTAAATTTGTAATGAAGTGTGAATGCATGT	548	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.076	0.068	0.724	2.214	1.380	1.637
Raw	2.565	3.845	68.406	313.702	72.154	91.629

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54016.1	1081	2e-24	15 - 74	100	60 / 60	minus	None
JLOC1	JLOC1_34750.1	979	4e-23	1 - 57	100	57 / 57	minus
Harvest21	ABC21987	633	3e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_25732	633	3e-25	549 - 608	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_25732 633 Hv_44K_v2
GCAACAGCACGGCCGCCGGTCGATCGATCGATCAGCCATGCCGCGGAACTACCGCCTGCC
GTCGTACCACCGGCAGAGCCCGGCGATCCGGTGCCTCAACTTCCTCTGCGCGGTGCTGCT
CACGCTGGTCCTCATCGCCGGCAGCGTCGGGCTCCGCCTGGTGCTCAACTCCACGGTGAG
GTTCCAGGTGAAGCTGTGGGACACCAAGGAGCACCACTTGAAGGCGGACTGCGGGTTCAA
GATCACCGGGGACGGGAGCCTCCACCAGGAGGACAGGAACACGCCGTGCACGCTCTACTT
CTAGTGGATCATTCAAGCTGCTCCTCTAGTCTCTTATTTTTACTTCCCTCTGATTTGCTT
CCCTTTTTTCTTGAACATAACTGCTTGTTATTTGGGTTTGGGGTGGTATTGGTGATTCCT
TTGTTTTAAGCCATGTGCTTACATACATGTATTGATGACTAGTAGTACTTAGGTTTTATA
GATTGCGATAGTTCTAATGCAAACATGGATGGTGTGAGCATTAAAGGGTACTGAAATTTG
GTTCCAGGCTGCCAGATGTCATGAACTTTGTGATCATTGTAAATTTGTAATGAAGTGTGA
ATGCATGTGAGAATCGAAAATGTTTCAAATGTG

Homology of Contig U35_25732 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None