- Probe CUST_5164_PI390587928
- Source Contig U35_25737
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5164_PI390587928 | Hv_44K_v2 | CATTGAGAAATATGCCGAATGCCAAGTACATTTGAACGCTGTATTATTATGGTTTTAGAG | 242 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.506 | 1.633 | 1.243 | 0.862 | 0.271 | 0.307 |
| Raw | 421.447 | 736.041 | 479.005 | 535.795 | 58.305 | 70.668 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5490.1 | 3005 | 9e-22 | 1184 - 1238 | 100 | 55 / 55 | minus | ABC25890 |
| MLOC | MLOC_5490.2 | 1795 | 9e-22 | 25 - 79 | 100 | 55 / 55 | minus | ABC25890 |
| JLOC1 | JLOC1_3532.1 | 1804 | 5e-22 | 45 - 99 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC25890 | 343 | 3e-25 | 243 - 302 | 100 | 60 / 60 | plus | ABC25890 |
| Harvest35 | U35_25737 | 343 | 3e-25 | 243 - 302 | 100 | 60 / 60 | plus |
Contig Sequence (343 bp)
>U35_25737 343 Hv_44K_v2 GATTACTTTGGGGGTGTTGTGTCCACCGTGATTCCAGCCTTGGTAGGGCAGTTGCTGAGA AGCTCTTTGAGTTCTATCCAGACAAGGCTTCTTACAAGATTATGCTTTCAAATTTGTATG CATCAGAGGGGATGTGGTGGGATGCTGAGGAGGTCAGGGCCGAGATGTCGAAAGAAGATA TGCACAAGAACACAGGGATAAGTTGGGTTGGGGAAATAAGCAAATGATGGTTGGGTTTGC ATCATTGAGAAATATGCCGAATGCCAAGTACATTTGAACGCTGTATTATTATGGTTTTAG AGAAATGAAATATCTGAAATTCCTTGAAAAAAAAAAAAAAAAA
Homology of Contig U35_25737 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |