- Probe CUST_5162_PI390587928
- Source Contig U35_25739
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5162_PI390587928 | Hv_44K_v2 | CATAGGGGTGAGTGTACACTCGTGTATGTGAGCGACTTCGATTGTACTTTGTTCAAAAAA | 227 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.351 | 3.238 | 1.236 | 0.793 | 0.389 | 0.649 |
| Raw | 3764.943 | 3458.527 | 1226.998 | 1220.343 | 211.584 | 386.449 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC31669 | 348 | 3e-25 | 227 - 286 | 100 | 60 / 60 | plus | ABC31669 |
| Harvest35 | U35_25739 | 349 | 3e-25 | 228 - 287 | 100 | 60 / 60 | plus |
Contig Sequence (349 bp)
>U35_25739 349 Hv_44K_v2 GGGATGGTTAGGAGGATTGTGGTATCCCTGCCCACCAGAGTTCAAGTCCCAGACTTGACG TTGATGCTTGCATTTTCCTGGATTTATTTCAGGTATTCCGGCGAAGTGCTTTCAGTGGGA GGAGACGTTCCCGTCGACAACGAAGGCATCAGTGGTGACTTCGTCAATCTTAAGATGATG TGCCGGCTTAGTCTCTCGAAGGTGCTCATAGGGGTAGGGTATGCGTTCATAGGGGTGAGT GTACACTCGTGTATGTGAGCGACTTCGATTGTACTTTGTTCAAAAAAAAAGTGTTGCCTT GTATAAGGAAATGAAGGGAATATTAGTTTTCGAAAAAAAAAAAAAAAAA
Homology of Contig U35_25739 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |