barSeed - Barley Seed Development Database

Probe CUST_5161_PI390587928

Source Contig U35_37710

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5161_PI390587928	Hv_44K_v2	GATAAAATCATTCTCCCACCAACGAGAGTATTTGCCTTGGTAGTCTTCGTTGAAGCAACT	536	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22256.1	3193	7e-23	2032 - 2091	98	59 / 60	plus	ABC19645
MLOC	MLOC_22256.4	2139	7e-23	630 - 689	98	59 / 60	plus	ABC19645
MLOC	MLOC_22256.2	3368	7e-23	2331 - 2390	98	59 / 60	plus	ABC19645
MLOC	MLOC_22256.3	4207	7e-23	1900 - 1959	98	59 / 60	plus	ABC19645
JLOC1	JLOC1_15428.3	3896	4e-23	1607 - 1666	98	59 / 60	plus
JLOC1	JLOC1_15428.2	4150	4e-23	1861 - 1920	98	59 / 60	plus
JLOC1	JLOC1_15428.1	4299	4e-23	2010 - 2069	98	59 / 60	plus
Harvest21	ABC33382	611	3e-25	537 - 596	100	60 / 60	plus
Harvest35	U35_37710	611	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_37710 611 Hv_44K_v2
GAGGTTACGTGCTTTTTAGCCTTCCAGACTCAGCAGTCAGGGCACTTGATGAATTAGACA
ACTTAAGTTTTCAGGGGCGACTGCTACGTGTTAAGGCTGCTAAACCACTTAATAATAAGA
CATTTGAGTCTAGTCATTTTGCTGTTGACGAGAAAATGAATCTCAAGCAGAGAAGGTTGG
AACAAAAGAAAACTTCTGAAATTGGTGGGGATACAAGAGCATGGAACAGCTTTTATATGC
GTCAAGATACTGTCGTTGAAAACATAGCAAGGAAGAATGGTATAAGTAAGAGTGAATTAC
TTCATAGGGAAGCGGATGACCTTGCTGTTCGTATTGCTCTTGGTGAGACACATGTCATTG
CGGAGACCAAAAAATATCTATCTAGGTCTGGAGTTAATGTTGATGCCTTGGAAGAACATA
CTTCCAAAAGAAACGAGAAGTTGAAACGAAGCAACCATGTGATATTGGTAAAAAACTTGC
CATATAGTTCTTCTGAAGAAGATCTTGCTGCGATGTTTCAGAAACATGGAAGTTTGGATA
AAATCATTCTCCCACCAACGAGAGTATTTGCCTTGGTAGTCTTCGTTGAAGCAACTGAGG
CTCGTCATGCT

Homology of Contig U35_37710 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52200.1	905	1e-107	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi5g21380.4	662	8e-124
Arabidopsis v10	AT4G19610.1	816	4e-67	nucleotide binding;nucleic acid binding;RNA binding \| chr4:10677482-10681623 FORWARD LENGTH=816