barSeed - Barley Seed Development Database

Probe CUST_5153_PI390587928

Source Contig U35_13763

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5153_PI390587928	Hv_44K_v2	GCAGCTCCGCGAATGCGTTCCGAAAGAAATTGGCAGCCAATCATCATCGTTTGTAAAAAA	574	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67948.2	1553	3e-21	990 - 1046	98	56 / 57	plus	ABC00599
JLOC1	JLOC1_44914.1	1227	2e-21	990 - 1046	98	56 / 57	plus
Harvest21	ABC00599	645	3e-25	12 - 71	100	60 / 60	minus	ABC00599
Harvest35	U35_13763	645	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_13763 645 Hv_44K_v2
CTTCAACGTCAAGAACGTGGCTGTCAAGGATCTCAAGCGTGGGTATGTTGCTTCCAACTC
CAAGGACGACCCTGCCAAGGAGGCTGCCAACTTCACTGGCCAGGGTGGTTCATGATGATA
GGCCCGCGACGACGAGGGACGGGGACCGCCGCCGCCCCCTGGCGGCGGAGCCGGAGGAGC
CGGTGTCGGAGGAGGAGATCGAGGAGGCCGGCGGCGAGGTGGACGCGCGCGCCGACGACT
TCATCAACAAGTTCCGCCACCAACTGAAGCTGCAGCGCATCGACTCCTTCATGCGCTACC
GGGATACTCTCCGCCGCGGCCAGGCGACGGCCGTGGCGGGCGCCGAGAAGTAGAACCAAT
CCGGACGGAGAGACTCAGGTCAGGGGGGCTAGATGCAAGAACGACAAGAGATTCGGGGAG
GAGGAAGAGGAGCCGGTAGTTTCTTCCTTCGTCCCCCCTTCTGTTTCGGTTTTTCCTTTT
CTTTCCCCTGCTTGCTTGGATGCTAGTAACATATTCTAGTTTTGGATCAAAGAACTCTGC
AATGTGGAAGTGGAACCATATGGTCCTGTGGATCGCAGCTCCGCGAATGCGTTCCGAAAG
AAATTGGCAGCCAATCATCATCGTTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13763 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None