barSeed - Barley Seed Development Database

Probe CUST_5151_PI390587928

Source Contig U35_38405

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5151_PI390587928	Hv_44K_v2	TCATTCACAATTCCATCGACAAGAGAGCTTCTTCAGATATTCGAAATCGCAGCTCCTGTT	502	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354895	2184	2e-24	1031 - 1090	100	60 / 60	plus	ABC14166 ABC39907
MLOC	MLOC_72453.2	3667	2e-24	2948 - 3007	100	60 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.3	3767	2e-24	3038 - 3097	100	60 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.4	4092	2e-24	3363 - 3422	100	60 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.1	4304	2e-24	3575 - 3634	100	60 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.6	1881	2e-24	1152 - 1211	100	60 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.7	2296	2e-24	1567 - 1626	100	60 / 60	minus	ABC14166 ABC39907
MLOC	MLOC_72453.5	2892	2e-24	2162 - 2221	100	60 / 60	minus	ABC14166 ABC39907
JLOC1	JLOC1_48190.3	2421	8e-25	661 - 720	100	60 / 60	plus
JLOC1	JLOC1_48190.2	1863	8e-25	671 - 730	100	60 / 60	plus
JLOC1	JLOC1_48190.1	2431	8e-25	671 - 730	100	60 / 60	plus
Harvest21	ABC34365	600	3e-25	503 - 562	100	60 / 60	plus
Harvest35	U35_38405	600	3e-25	503 - 562	100	60 / 60	plus

Contig Sequence (600 bp)

>U35_38405 600 Hv_44K_v2
GCCGTGTTCTGCGACTATCTGTGCTCATATTCATGTTCCTGTCGGTCGCAACCTCCAACA
TGGTGGCCACCTCCTTAGCTACAAGGATGAAGAACTTGCACAGCATCAAGTGTCTATGCT
GCTATTTTTAGCTCTTACTTTTGGTATAGGAATGTTTTTCTTCACTAGGATTTTGGGGGT
CCAAGTATTGACTGCTTTTACTGGATCCAAAAATCATGAAATTATTTCTGCTGCCAATAC
ATATGCACAGATTCGAGGTTTTGCATGGCCTGCAGTTCTCGTTGGCTTAGTTGCCCAAAG
TGCTAGTCTAGGCATGAAAGATTCTTGGGGTCCTCTGAAGGCATTGGCAGCAGCTAGTGT
TATAAATGCTGTTGGCGATATATTTCTTTGCTCTGTATGTGGCTATGGAATTGCTGGTGC
CGCCTGGGCTACTATGGTTTCACAGATTGTTGCAGCTTTTATGATGATGCAAAATCTAAA
CAGTAGAGGTTTTCGAGCGTTCTCATTCACAATTCCATCGACAAGAGAGCTTCTTCAGAT
ATTCGAAATCGCAGCTCCTGTTTTCGTGACAATGACATCCAAGGTAGCATTTTATGCATT

Homology of Contig U35_38405 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02980.1	533	4e-101	protein\|MATE domain containing protein, expressed
Brachypodium v1_2	Bradi3g02170.2	547	7e-104
Arabidopsis v10	AT2G21340.1	559	2e-73	MATE efflux family protein \| chr2:9132629-9136236 FORWARD LENGTH=559