barSeed - Barley Seed Development Database

Probe CUST_5150_PI390587928

Source Contig U35_38406

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5150_PI390587928	Hv_44K_v2	TTCAAATATGGTGTTACCGACTGCTCTGTTACTGGCAGCAAGTCCAAAGGCATATTGGCA	317	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.043	1.130	1.507	1.192	0.824	0.590
Raw	201.187	295.139	396.826	463.748	122.085	93.957

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371135	2751	2e-24	1808 - 1867	100	60 / 60	plus	None
MLOC	MLOC_7528.1	1804	2e-24	870 - 929	100	60 / 60	plus	None
JLOC1	JLOC1_4968.1	1844	8e-25	793 - 852	100	60 / 60	plus
Harvest21	ABC34366	687	3e-25	318 - 377	100	60 / 60	plus
Harvest35	U35_38406	687	3e-25	318 - 377	100	60 / 60	plus

Contig Sequence (687 bp)

>U35_38406 687 Hv_44K_v2
GCGGGCTGGAGAGGAACTTGATCAGACCAGGCCCGACACTCAAGGGGCCGATTGGGACGA
CTGAGATGCAGTTCCAGTGTCTTGGTTGCAGCCATTCTTCTGAGATGTTTGGATTTGTTA
AGGAGGTGTTCAATCGTTGCGCAGAGAACTGGAATGCTGAGACGCTCATGAAAGAGCTAG
ATGTTGTCAGGAAGATATTTGCTGCTAGTGATGATTTTGAGGGGAAGGGGCTTCATGCCA
AGGCTGAAGAGGTCCTCACCATGCTTTCAAAGAAACTTATCTCCCTGCCGGATGCATTGA
ACAACATGCTACAATTCTTCAAATATGGTGTTACCGACTGCTCTGTTACTGGCAGCAAGT
CCAAAGGCATATTGGCAGGTCAGGCGAGCCAATCTACAATCCCGCTTCTATCTCCAACCA
TCAGTCCACCAAAATCGTTCAATTTCAATGCCAGCACCTCCATTCTCGACTCACAGATTG
ATGCCCTCAAGTCCAGCCCAAAGCCACTCTCTATCGAACCCCGTTTTGGCACCAGCTCAA
ACCCACTCAAAATTGAAGCCCGTTTTGGCGCCAGCTCAAAGCCGCTGTCAGTCGACTCCC
GTTTCGGCGCCAGCCCGAAGCCGCTGTCGATTGATTCCCATTTCAGCGCCAGCCCGAAGC
CGCTCTCTATCGAGCCCCATTTCAGCA

Homology of Contig U35_38406 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g13590.1	728	4e-86	protein\|potyvirus VPg interacting protein, putative, expressed
Brachypodium v1_2	Bradi1g68580.1	769	2e-122
Arabidopsis v10	None