barSeed - Barley Seed Development Database

Probe CUST_514_PI415269222

Source Contig TA46898_4513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_514_PI415269222	Hv_44K_v2	GAAGACAGATTTGATCTTGTGAGATTTGTGAAGCTGGTTGCTGCTGAAGGCCTATTTTTT	433	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252929.1	3034	2e-24	445 - 504	100	60 / 60	plus	ABC12244
MLOC	MLOC_63961.1	861	2e-24	574 - 633	100	60 / 60	plus	None
JLOC1	JLOC1_41950.1	874	8e-25	587 - 646	100	60 / 60	plus
Harvest35	U35_22085	547	3e-25	434 - 493	100	60 / 60	plus

Contig Sequence (533 bp)

>TA46898_4513 533 Hv_44K_v2
AAAAAACAAAACTATTTCCAAAATAAAAGGAAAAACCTCGCTTCATCCGTCGCTCTGTTT
CTCTACTCTGCTTCTGGCCATGGCCGCCTCGCCGCCGCCCTCGCGATTCGGCCCCCCCTT
CCCCCTCTTCCTCCTCCTCGTCGTCGCCGGTTACTTCACCGCCTCAGCATTAGCGGCGGG
GGAGCTGAGCCAGGTGGTGGGGAGGGGGACGGATGGCCCCTACTTCGAGCCGTTCAACGT
GAGCTACGATCATCGCGCGGTGCGCATCGGCGGGCAGCGGAGGATGCTCGTCTCAGCGGG
AGTGCACTACCCCCGCGCCACACCCGAGATGTGGCCTAGTATAATTGCAAAGTGCAAGGA
AGGTGGTGCAGATGTAATTGAGACATATGTCTTTTGGAATGGGCATGAACCAGCCAAAGG
TCAGTATTACTTCGAAGACAGATTTGATCTTGTGAGATTTGTGAAGCTGGTTGCTGCTGA
AGGCCTATTTTTTTTCCTTCGTATCGGGCCATATGCTTGTGCTGAATGGAATT

Homology of Contig TA46898_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g24170.1	928	6e-64	protein\|beta-galactosidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g07990.2	749	2e-77
Arabidopsis v10	AT2G32810.1	887	1e-53	\| Symbols: BGAL9 \| beta galactosidase 9 \| chr2:13919410-13925325 REVERSE LENGTH=887