barSeed - Barley Seed Development Database

Probe CUST_514_PI390587928

Source Contig U35_32088

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_514_PI390587928	Hv_44K_v2	AAAGACTCGAGCTTTGACCGTCACGCGGCGCCATGGCGATCCGCATGACCGTCTCCTACT	274	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363763	2293	2e-24	356 - 415	100	60 / 60	plus	ABC12217
MLOC	MLOC_41323.1	510	2e-24	76 - 135	100	60 / 60	minus	None
JLOC1	JLOC1_26938.1	510	8e-25	76 - 135	100	60 / 60	minus
Harvest35	U35_32088	428	3e-25	275 - 334	100	60 / 60	plus

Contig Sequence (428 bp)

>U35_32088 428 Hv_44K_v2
ATCCATCCCCTCCTCCTCGCCCCCTCCGCCGCTGACCTCGTCGGCCACCGCCGCCGACGA
GGCCCCCTGCCGCCGGATACCCGCCCCCTACACACCCGCTCCGTCTCAACCTGAACCCCG
CTCCTCGCCCCAGCGCGCCGTGTTACCATCCGACTTCGCTGATCCTGGGAACCCTAGATC
CCCTGGGCGCCCGATCGCGCGCCCCTTCCGGAGGGGCGCCGTCCCGATCTCCCCGGAGGA
AATGCTCCGTCGCGCCCCGTGAGATCCGGCCGCCAAAGACTCGAGCTTTGACCGTCACGC
GGCGCCATGGCGATCCGCATGACCGTCTCCTACTCCGGCTACGTGGCGCAGAGCCTGGCC
TCCTCCTTCGGCCTGCGCTGCACCACCGCCGCCGCCGCGGGCTCCGGGGCCGCGCCAGGC
GCCGGCTG

Homology of Contig U35_32088 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None