- Probe CUST_5149_PI390587928
- Source Contig U35_38407
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5149_PI390587928 | Hv_44K_v2 | CGGTACTATTGCAACTTGGAAATAATAAACCTCTGTTTCTGAATAAAGCTTTTGTCCGAA | 564 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.012 | 0.010 | 0.492 | 1.618 | 1.803 | 1.744 |
| Raw | 105.064 | 52.062 | 10016.443 | 46655.200 | 19478.533 | 20629.733 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_28157.1 | 1316 | 2e-24 | 264 - 323 | 100 | 60 / 60 | minus | ABC01458 ABC01460 ABC01461 ABC01466 ABC01469 ABC01470 ABC32264 ABC34367 |
| Harvest21 | ABC34367 | 642 | 3e-25 | 565 - 624 | 100 | 60 / 60 | plus | ABC34367 |
| Harvest21 | ABC32630 | 641 | 3e-25 | 19 - 78 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01466 | 615 | 1e-23 | 543 - 602 | 98 | 59 / 60 | plus | ABC01466 |
| Harvest21 | ABC01460 | 760 | 6e-22 | 655 - 708 | 100 | 54 / 54 | plus | ABC01460 |
| Harvest35 | U35_38407 | 642 | 3e-25 | 565 - 624 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37037 | 641 | 3e-25 | 19 - 78 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14422 | 760 | 6e-22 | 655 - 708 | 100 | 54 / 54 | plus |
Contig Sequence (642 bp)
>U35_38407 642 Hv_44K_v2 TTCTACCAGGCCGGCGAGTACGCCGACAAGAACCCCAACTTCGTCGGCTGCGTCGAGGGT GCCCTCGGCATACGCGACTGGCTCGAGTCCAAGGGGCACCACTACATTGTCACCGACGAC AAGGAGGGGTTGAACAGCGAGCTGGAGAAGCACATTGAAGACATGCATGTCCTGATAACC ACCCCATTCCACCCAGCCTATGTTACTGCAGAGAGGATCAAGAAGGCAAAGAACCTCGAG CTGCTTCTCACAGCTGGGATTGGCTCGGACCATATTGATTTGCCAGCAATCGCAAAGTTT CGGCCAGCCTCAGCAGCAGGTTCCGGTTGAGATAATAAGGATGGTGCTTCAGACCCTTCC GTCGATGTGCAGCGTGAACATTCCGCAATATTGCACCACCACCCCGTGCACCACCATCAC CCCCACCATCTACAGCATCCCCATGGCAGCTACCTGTGCCGGTGGTGTCTGCTAAGATCT GTGATGTGCTAGCTAGATCGATCACCGTTTAGTTGATCGATGAAGAGCTACAAAATAAAA GTGCCATACGTCATCATGTGTGGCCGGTACTATTGCAACTTGGAAATAATAAACCTCTGT TTCTGAATAAAGCTTTTGTCCGAATAAAAAAAAAAAAAAAAA
Homology of Contig U35_38407 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g29180.1 | 377 | 4e-60 | protein|erythronate-4-phosphate dehydrogenase domain containing protein, expressed |
| Brachypodium v1_2 | Bradi1g42270.1 | 378 | 5e-59 | |
| Arabidopsis v10 | AT5G14780.1 | 384 | 4e-51 | | Symbols: FDH | formate dehydrogenase | chr5:4777043-4779190 FORWARD LENGTH=384 |