barSeed - Barley Seed Development Database

Probe CUST_5147_PI390587928

Source Contig U35_38409

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5147_PI390587928	Hv_44K_v2	GCTATTTACAAACTGAACGTCCATTACTTCATAGGGTGGCATGTCAAATGAGCTGTACAA	371	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42078.1	186	2e-24	9 - 68	100	60 / 60	plus	ABC05042
Harvest21	ABC34370	554	3e-25	372 - 431	100	60 / 60	plus
Harvest35	U35_38409	554	3e-25	372 - 431	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_38409 554 Hv_44K_v2
GCTGGAACCATTGACAACATAATTCAATGCAAGTTGTACAGGCCCGGATCAGTTGGTTTT
GTGTCTAAATCGGTATGCTTCAATTTCGTTGTTAATAAACTTACTTCCTTCATCACATGT
ATTTCTGTATGATTCACGTCCATAAATAAAGTAACAGAATAAAAAGAACTGTCCATTGTG
TCTGTAAATACGATTTTTTGTTACATATATATGGAGTCTTAGAACTTTAGAACACCATTA
TGATGCTTTGGCTTTTATCTTTTTATTTGGAAAAATGTGGAGAGCTCCTGACTTTCCATT
TGTTTTCATTCCAGAACTCCACTTTAATTTGACGACTGACTAGTATATATTCTCAACTGT
ATATTTTGGTTGCTATTTACAAACTGAACGTCCATTACTTCATAGGGTGGCATGTCAAAT
GAGCTGTACAACACCATTGCAAGAGTGACTGATGGTATTTATGAAGGAATTGCAATTGGA
GGAGATGTTTTCCCTGGCTCAACTCTTTCAGATCACATTCTGCGTTTTAATAACATACCT
CACGTTAAAATGAT

Homology of Contig U35_38409 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None