barSeed - Barley Seed Development Database

Probe CUST_5143_PI390587928

Source Contig U35_14453

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5143_PI390587928	Hv_44K_v2	GCGATCGCGTTGTACTAGTAAGATTATGTATTTGTGTAACTGATTTTGGGTAATTGAATC	1091	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368618	1161	3e-22	1093 - 1151	98	58 / 59	plus	ABC01776 ABC01778
MLOC	MLOC_24232.1	921	3e-22	460 - 518	98	58 / 59	plus	ABC01778
MLOC	MLOC_24233.1	472	3e-22	241 - 299	98	58 / 59	plus	ABC01778
JLOC1	JLOC1_16676.1	657	1e-22	460 - 518	98	58 / 59	plus
Harvest21	ABC48352	507	3e-25	58 - 117	100	60 / 60	minus
Harvest21	ABC47827	563	3e-25	32 - 91	100	60 / 60	minus
Harvest21	ABC01778	1186	3e-25	1092 - 1151	100	60 / 60	plus	ABC01778
Harvest21	ABC01780	1201	5e-23	1111 - 1169	98	58 / 59	plus
Harvest35	U35_14453	1186	3e-25	1092 - 1151	100	60 / 60	plus

Contig Sequence (1186 bp)

>U35_14453 1186 Hv_44K_v2
GGCCTGCAGGCGCGCCTGAGCTCACGCATCTCTCTCAGCTCCGGCAAGCAACCACCAGCG
CTCACCTCTTCCGTCGCTTCCCCGCTGCAATGTCGACCGACGTGGCTGCCGACGTCCCGG
CCCCTGAGGTGGAGGTGGCCGCCGACCCCGTCGTGGAGACCACGGCTGAGGCCGCCGCCG
GCGACGCGAAGCCGGCCAAGGAGACCAAGGTCAAGGCTGCCAAGGCCAAGAAGCCGTCCG
CTCCTAGGAAGCCCCGCGCCACCCCCGCACACCCCACCTACGCCGAGATGGTGTCGGAGG
CGATCACCGCGCTCAAGGAGAGGGGCGGGTCGAGCACCATCGCCATCGCCAAGTTCGTCG
AGGACAAGCACAAGGCGCACCTCCCGGCCAACTTCCGCAAGATGCTGTCGGTGCAGCTCA
AGAAGCTGGTCGCTTCTGGCAAGCTGACCAAGGTCAAGGCCTCCTACAAGCTGTCGGCCG
CCCCGGCCAAGCGCAAGCCGGCGGCCAAGAAGAAGCCCACCGCCAAGAAGCCCAAGGCCA
AGGCGCCAGCGAAGAAGGCCGCCGCCAAGTCACCCGCGAAGAAGGCCGCCGCCAAGCCCA
AGGCCAAGGCCCCAGCCAAGCCCAAGGCCGCCGCGAAGCCGAAGGCAGCTGCCAAGCCCA
AGGCCAAGGCCCCTGCCAAGACCAAGGGCGCAGCCAAGCCGAAGGGCCGCCCCGCCAAGG
CGGCCAAGACCTCAGCCAAGGACGCGCCAGGGAAGAAGGCGCCGGCCGCTGCCGCCGCCC
CCAAGAAGCCGGCAGCCAGGAAGCCGCCCACCAAGAGATCCGCGCCGGTGAAGAAGTCCG
CGCCCGCCAAGAAGGCGGCGCCGGCGAAGAAGGCCCCCGCCAAGAAGGCCAAGAAGTAGG
CTCCCGCGTGAGAGATCCTAGGGCTTGCCGGCTTGGCGATAGATTTCCAGTAGCTGCTTC
TCCTGTTCTGTGGTGTTAGTCGAGATGTCCGGGCTGTGTCGTTGTTGCTAGGCTGTAAAT
TTGAAATCTGGGTTGGGGCGCGCTGGTGATCCGGTGCACCCCTTGGTGTGTGTGTCTCTG
TAGCGGTGACGGCGATCGCGTTGTACTAGTAAGATTATGTATTTGTGTAACTGATTTTGG
GTAATTGAATCTTCATTTGAGAACCAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None